Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.4e-259 898.3 433 100.0
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.2e-196 689.1 432 77.5
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.7e-185 652.9 432 73.8
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.2e-167 593.6 432 67.8
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 3.5e-162 575.5 433 66.1
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 6.0e-162 574.7 432 67.1
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.9e-156 555.8 435 66.2
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.4e-155 553.5 433 64.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.2e-154 550.4 436 63.3
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.1e-151 539.7 432 64.4
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.4e-150 537.0 433 64.0
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 8.9e-150 534.3 435 63.0
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.3e-148 530.4 433 62.6
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.7e-148 528.9 434 63.1
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 5.4e-147 525.0 432 61.6
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.2e-146 523.9 367 70.0
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.2e-146 523.9 433 62.8
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 8.6e-145 517.7 432 60.4
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 2.5e-144 516.2 324 78.4
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 3.3e-144 515.8 386 66.3
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 5.6e-144 515.0 431 60.8
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 6.2e-143 511.5 440 61.6
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 2.4e-142 509.6 425 61.4
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 4.0e-142 508.8 349 73.4
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 5.8e-141 505.0 437 60.0
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.3e-140 503.8 352 70.5
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.7e-140 503.4 327 77.1
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.4e-139 500.4 432 60.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.4e-139 499.6 411 61.6
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.3e-137 493.8 352 71.3
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 7.3e-136 488.0 375 64.5
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.8e-135 486.1 328 72.3
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 9.0e-134 481.1 342 70.5
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.9e-132 476.1 327 72.8
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.9e-132 476.1 326 72.4
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 3.8e-132 475.7 354 66.9
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.6e-130 470.3 374 64.4
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.1e-130 469.9 314 71.0
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.1e-130 469.9 440 57.0
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.7e-130 469.5 328 70.7
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 3.5e-130 469.2 332 71.7
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 6.0e-130 468.4 325 69.5
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 6.6e-129 464.9 355 66.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 6.6e-129 464.9 357 64.1
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 7.3e-128 461.5 333 69.1
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.6e-127 460.3 375 61.9
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 4.8e-127 458.8 437 57.2
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.1e-127 458.0 385 60.0
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.4e-126 457.2 351 65.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.8e-126 456.8 354 64.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.3e-126 455.3 354 64.1
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 9.0e-126 454.5 382 60.7
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.2e-125 454.1 347 63.4
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.0e-125 453.4 350 63.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 5.8e-125 451.8 375 61.3
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 5.8e-125 451.8 376 61.2
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 5.8e-125 451.8 317 70.3
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 7.6e-125 451.4 382 61.3
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 7.6e-125 451.4 382 61.3
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.9e-125 451.1 354 63.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.3e-124 450.7 382 61.3
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.2e-124 449.9 350 64.6
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 4.9e-124 448.7 331 66.2
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 8.4e-124 448.0 325 68.3
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.9e-123 446.8 327 68.2
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.4e-123 445.3 323 68.1
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.4e-123 445.3 323 68.1
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 9.3e-123 444.5 330 68.5
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.1e-122 443.4 332 68.7
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.7e-122 443.0 331 68.6
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 2.3e-121 439.9 368 61.7
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 6.7e-121 438.3 333 67.3
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 8.7e-121 438.0 327 65.4
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 8.7e-121 438.0 322 64.9
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 4.3e-120 435.6 246 84.1
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 7.4e-120 434.9 333 67.3
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.3e-119 434.1 434 54.8
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.1e-118 429.5 436 54.4
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 5.3e-118 428.7 321 65.7
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 5.3e-118 428.7 242 82.6
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 6.9e-118 428.3 356 62.9
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.9e-116 422.9 312 67.9
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.1e-115 421.0 324 63.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.1e-115 421.0 331 64.4
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 7.9e-114 414.8 364 59.1
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.0e-113 414.5 313 65.2
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 6.1e-106 388.7 329 59.6
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.8e-105 387.1 356 58.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.9e-105 386.0 432 53.0
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.5e-101 374.0 340 59.7
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.0e-100 371.3 306 63.7
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.6e-98 364.0 361 54.8
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.0e-97 361.3 264 67.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 8.8e-97 358.2 314 57.3
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 2.8e-95 353.2 192 84.4
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.4e-94 350.1 226 73.5
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.3e-94 349.0 231 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 4.7e-90 335.9 349 50.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.0e-86 322.0 181 85.1
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.9e-83 313.9 270 55.9
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.9e-81 306.2 273 54.6
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 2.9e-76 290.0 310 52.3
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 5.5e-75 285.8 262 53.4
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 6.1e-74 282.3 293 47.1
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 3.1e-70 270.0 196 63.3
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 9.4e-67 258.5 238 60.5
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.0e-65 255.0 300 50.3
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 5.2e-65 252.7 227 55.5
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.0e-57 226.5 118 81.4
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 7.5e-56 222.2 226 53.1
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 8.3e-55 218.8 123 80.5
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.3e-44 184.1 103 85.4
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 7.3e-43 179.1 102 83.3
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.7e-42 176.4 229 44.5
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.4e-41 174.9 277 40.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 7.5e-40 169.1 260 41.2
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 4.6e-37 159.8 233 44.6
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.9e-36 156.8 99 72.7
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.7e-34 149.8 176 51.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 5.2e-33 146.4 198 40.4
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.2e-29 135.2 163 52.1
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.0e-28 132.1 62 91.9
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 4.4e-24 116.7 341 27.0
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.8e-23 113.6 99 61.6
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.4e-22 111.7 197 41.6
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 2.7e-21 107.5 189 35.4
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 7.8e-21 105.9 55 76.4
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 3.9e-20 103.6 209 37.3
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 7.3e-19 99.4 61 83.6
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-18 98.2 63 81.0
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.1e-17 94.0 63 74.6
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.0e-16 91.3 122 42.6
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 4.9e-15 86.7 78 59.0
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.2e-13 82.0 180 33.3
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.1e-09 68.9 48 75.0
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.8e-09 68.2 52 61.5
SEGI_17331 Sequoiadendron giganteum HOM05D002799 ORTHO05D385286 2.4e-06 57.8 119 33.6


User provided reference genes

Program Settings