Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 3.4e-46 188.7 162 100.0
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-23 114.0 126 79.4
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.1e-23 112.5 115 86.1
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 3.1e-23 112.5 114 64.0
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 9.1e-23 110.9 117 68.4
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.9e-22 108.2 113 51.3
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.0e-21 107.5 121 81.8
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.7e-21 106.7 116 80.2
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.5e-21 104.8 116 82.8
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 8.5e-21 104.4 117 84.6
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.5e-20 103.6 115 56.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.9e-20 103.2 116 81.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 2.5e-20 102.8 115 61.7
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.5e-20 102.8 116 49.1
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 5.5e-20 101.7 113 56.6
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 7.2e-20 101.3 116 80.2
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.2e-19 100.5 115 48.7
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.2e-19 100.5 127 65.4
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 2.1e-19 99.8 115 67.0
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.1e-19 99.8 117 69.2
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.7e-19 99.4 113 69.9
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 2.7e-19 99.4 119 78.2
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 3.6e-19 99.0 116 66.4
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.6e-19 99.0 117 80.3
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.1e-19 98.2 116 67.2
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.1e-19 98.2 127 71.7
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 6.1e-19 98.2 117 49.6
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 6.1e-19 98.2 114 80.7
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.0e-19 97.8 115 62.6
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.0e-19 97.8 126 72.2
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.0e-18 97.4 119 59.7
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.0e-18 97.4 116 81.9
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.0e-18 97.4 113 79.6
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.4e-18 97.1 115 57.4
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.4e-18 97.1 130 70.0
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.4e-18 97.1 113 70.8
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.8e-18 96.7 117 63.2
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.8e-18 96.7 117 66.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.8e-18 96.7 122 54.1
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 2.3e-18 96.3 115 65.2
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 2.3e-18 96.3 121 62.8
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.3e-18 96.3 121 63.6
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.0e-18 95.9 113 67.3
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 3.0e-18 95.9 122 61.5
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 5.2e-18 95.1 118 62.7
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 5.2e-18 95.1 118 62.7
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 5.2e-18 95.1 117 62.4
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 5.2e-18 95.1 117 62.4
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.8e-18 94.7 115 66.1
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 6.8e-18 94.7 113 64.6
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 6.8e-18 94.7 117 61.5
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-17 94.0 115 64.3
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.5e-17 93.6 121 73.6
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 1.5e-17 93.6 118 73.7
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.5e-17 93.6 113 79.6
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.5e-17 93.6 113 64.6
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.5e-17 93.6 118 55.1
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.0e-17 93.2 115 62.6
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.0e-17 93.2 122 57.4
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 2.6e-17 92.8 127 70.9
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.6e-17 92.8 114 69.3
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 3.4e-17 92.4 113 53.1
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 4.4e-17 92.0 138 67.4
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 5.7e-17 91.7 115 45.2
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 5.7e-17 91.7 119 60.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.7e-17 91.7 116 70.7
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 7.5e-17 91.3 115 78.3
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 7.5e-17 91.3 121 60.3
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 7.5e-17 91.3 132 68.2
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.8e-17 90.9 44 86.4
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.3e-16 90.5 116 44.0
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.3e-16 90.5 137 67.9
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.3e-16 90.5 114 66.7
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 1.3e-16 90.5 120 57.5
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.7e-16 90.1 44 86.4
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 1.7e-16 90.1 44 86.4
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.2e-16 89.7 159 59.1
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 2.8e-16 89.4 43 88.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 4.8e-16 88.6 44 84.1
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 6.3e-16 88.2 49 79.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 8.3e-16 87.8 42 88.1
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 1.1e-15 87.4 44 84.1
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 1.8e-15 86.7 129 58.9
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.8e-15 86.7 44 81.8
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.8e-15 86.7 44 81.8
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.8e-15 86.7 44 81.8
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.8e-15 86.7 42 85.7
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.8e-15 86.7 44 81.8
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.8e-15 86.7 121 73.6
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 2.4e-15 86.3 116 42.2
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 2.4e-15 86.3 119 48.7
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 3.1e-15 85.9 123 71.5
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 3.1e-15 85.9 117 74.4
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 4.1e-15 85.5 44 79.5
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 4.1e-15 85.5 44 79.5
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.4e-15 85.1 44 84.1
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 7.0e-15 84.7 117 61.5
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 9.1e-15 84.3 44 79.5
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 9.1e-15 84.3 117 77.8
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.6e-14 83.6 44 77.3
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.6e-14 83.6 44 81.8
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 2.0e-14 83.2 125 49.6
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 2.0e-14 83.2 39 89.7
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 2.7e-14 82.8 104 52.9
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.5e-14 82.0 43 79.1
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.3e-13 80.5 42 76.2
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 8.5e-13 77.8 113 41.6
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.5e-12 77.0 141 65.2
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 1.9e-12 76.6 36 86.1
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.2e-12 75.9 35 88.6
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.2e-12 75.5 36 86.1
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.5e-12 75.1 110 70.9
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 2.7e-11 72.8 41 73.2
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 1.0e-10 70.9 36 77.8
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.0e-10 70.9 32 90.6
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.4e-10 70.5 121 57.0
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.4e-10 70.5 37 78.4
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 2.3e-10 69.7 123 48.8
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.2e-10 68.6 41 65.9
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.5e-09 67.0 115 65.2
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 4.4e-09 65.5 36 69.4
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.4e-09 65.5 116 66.4
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.3e-08 63.9 39 66.7
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.4e-07 60.5 124 33.9
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.4e-07 60.5 42 57.1
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.8e-07 60.1 38 65.8
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.1e-07 59.3 34 76.5
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 9.2e-07 57.8 42 54.8
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.2e-07 57.8 40 52.5
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.7e-06 56.2 40 52.5
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 4.5e-06 55.5 47 48.9
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.7e-06 54.7 39 53.8


User provided reference genes

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