Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 0.0e+00 1428.7 830 100.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.8e-271 939.5 829 70.6
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.6e-267 925.6 866 66.5
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 6.1e-264 914.4 842 68.2
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 5.5e-257 891.3 831 65.5
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.7e-245 852.0 819 64.3
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 6.3e-245 851.3 815 65.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 3.1e-244 849.0 815 65.2
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 6.1e-240 834.7 845 66.4
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 7.5e-238 827.8 819 63.4
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.4e-236 822.8 825 59.6
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.5e-235 818.5 825 62.8
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.0e-234 817.4 900 56.9
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.0e-231 807.4 824 62.4
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.0e-231 805.8 842 61.5
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 3.0e-231 805.8 826 62.6
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 7.8e-227 791.2 809 63.8
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 2.5e-225 786.2 820 63.0
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.6e-224 783.5 821 63.2
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 4.7e-224 781.9 869 60.6
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.8e-223 780.0 828 61.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.0e-223 778.9 820 62.6
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.2e-221 773.1 821 62.0
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 6.4e-221 771.5 813 61.5
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.0e-219 766.5 852 59.5
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 2.7e-219 766.1 821 61.8
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 4.6e-219 765.4 832 61.2
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 4.6e-219 765.4 837 59.6
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 2.3e-218 763.1 837 59.4
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 3.0e-218 762.7 838 62.2
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.9e-217 760.0 838 60.9
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 5.6e-217 758.4 844 60.2
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 7.3e-217 758.1 823 60.4
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 8.9e-215 751.1 845 58.2
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 8.9e-215 751.1 872 56.0
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 2.2e-213 746.5 837 59.0
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 9.2e-212 741.1 824 58.9
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.1e-211 740.0 840 59.3
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.7e-210 736.9 833 58.2
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.7e-210 736.9 843 53.7
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.0e-210 736.1 817 60.6
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 3.9e-210 735.7 844 61.1
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 8.6e-210 734.6 833 58.5
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.3e-209 732.6 845 58.9
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 8.1e-208 728.0 826 57.4
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.1e-207 727.6 831 59.8
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.4e-206 722.6 823 60.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 6.4e-205 718.4 840 56.5
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 8.3e-205 718.0 834 59.7
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.1e-204 717.6 797 60.5
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.1e-204 717.6 814 58.4
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 9.2e-204 714.5 830 53.5
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 9.2e-204 714.5 832 51.1
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 1.2e-203 714.1 824 51.8
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.6e-203 713.8 705 65.2
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.1e-203 713.4 837 57.5
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 3.5e-203 712.6 838 51.7
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.3e-202 710.7 828 59.5
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.5e-201 707.2 846 58.0
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.3e-201 706.1 827 54.9
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 2.8e-200 703.0 840 59.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.4e-199 700.7 793 52.7
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.4e-199 699.9 824 59.2
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 6.8e-199 698.4 852 54.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 6.8e-199 698.4 818 50.4
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 8.9e-199 698.0 857 52.6
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.5e-198 697.2 823 59.3
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 7.6e-198 694.9 824 57.0
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 4.9e-197 692.2 831 56.9
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 4.2e-196 689.1 837 52.4
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 5.4e-196 688.7 863 50.6
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 1.6e-195 687.2 849 50.8
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 2.1e-195 686.8 817 51.2
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-195 686.0 835 57.0
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 3.3e-193 679.5 796 57.4
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 5.6e-193 678.7 808 52.7
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 9.6e-193 677.9 779 59.1
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 3.6e-192 676.0 808 56.1
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 6.2e-192 675.2 810 55.1
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.1e-191 672.9 683 62.7
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.4e-188 664.1 832 56.4
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.9e-188 663.7 804 50.0
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 6.6e-186 655.2 772 57.5
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 7.3e-185 651.7 788 57.1
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.8e-183 647.1 787 56.0
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.8e-183 647.1 834 54.6
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 7.1e-180 635.2 820 53.0
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 8.7e-178 628.2 811 54.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 8.1e-176 621.7 775 50.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 9.0e-175 618.2 799 54.2
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.9e-172 610.5 495 66.5
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.3e-168 597.8 799 53.8
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.6e-168 597.4 792 53.4
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 8.2e-168 595.1 748 56.1
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.1e-167 594.7 685 59.7
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 1.1e-167 594.7 798 53.6
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.0e-167 592.8 792 53.3
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.6e-166 590.1 791 52.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 2.6e-166 590.1 791 53.0
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.3e-157 561.2 836 51.2
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.7e-136 491.1 871 45.7
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.4e-135 487.3 877 44.0
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.0e-133 481.9 863 45.5
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.5e-132 477.2 805 48.3
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.2e-132 476.5 491 55.8
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.0e-130 469.9 764 48.8
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.6e-129 467.2 836 41.5
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 4.8e-128 463.0 878 44.4
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 5.4e-111 406.4 839 38.7
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.7e-109 401.4 886 41.3
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.6e-99 367.1 582 50.0
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 7.5e-97 359.4 248 75.0
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 2.8e-75 287.7 576 35.9
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 2.9e-72 277.7 506 39.3
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 8.4e-72 276.2 461 40.6
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 5.4e-71 273.5 506 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 3.5e-54 217.6 804 30.2
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.2e-46 192.6 198 56.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.4e-42 179.1 181 53.6
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.4e-39 169.1 112 73.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 7.2e-39 166.8 719 31.6
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 3.3e-36 157.9 377 31.6
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 2.8e-35 154.8 450 32.7
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 4.1e-34 151.0 217 39.2
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 6.5e-32 143.7 156 51.3
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 7.9e-30 136.7 166 46.4
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 5.5e-23 114.0 232 36.6
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 8.8e-21 106.7 107 50.5
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 8.2e-19 100.1 300 34.7
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 3.5e-17 94.7 73 60.3
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.5e-15 89.4 121 48.8
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 9.8e-12 76.6 64 65.6
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 2.8e-11 75.1 62 66.1
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 4.8e-11 74.3 129 39.5
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 5.4e-10 70.9 63 61.9
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 1.6e-09 69.3 64 62.5
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 2.0e-09 68.9 76 55.3
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 3.5e-09 68.2 47 70.2
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 5.9e-09 67.4 189 30.2
Lj1C955T6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.7e-08 65.9 58 62.1
Lju170A28T4 Lonicera japonica HOM05D016202 ORTHO05D006406 8.5e-08 63.5 55 65.5
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 6.1e-06 57.4 150 32.7
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 8.0e-06 57.0 110 36.4


User provided reference genes

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