Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 2.0e-265 918.7 514 100.0
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 2.0e-265 918.7 514 100.0
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 4.3e-252 874.4 490 100.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.3e-171 607.1 453 78.4
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.0e-168 597.4 451 77.2
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.8e-166 589.3 468 74.4
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 9.9e-164 580.9 451 74.1
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.9e-163 579.3 439 77.2
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.7e-163 578.9 451 74.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 3.9e-160 568.9 447 74.0
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 6.6e-160 568.2 451 72.7
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.6e-158 562.4 449 73.3
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.4e-157 560.5 451 73.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.5e-156 557.0 445 71.7
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.0e-156 556.6 452 71.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 5.8e-156 555.1 451 72.3
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.7e-155 553.5 450 71.8
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 2.7e-153 546.2 451 71.4
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 5.1e-152 542.0 443 70.9
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.1e-152 542.0 450 70.2
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.6e-151 538.5 443 70.4
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.6e-150 535.8 448 70.1
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 4.8e-150 535.4 451 70.7
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.1e-149 532.7 451 69.4
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 6.9e-149 531.6 435 73.1
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 9.0e-149 531.2 465 68.6
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.2e-148 530.8 450 68.9
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.4e-148 529.3 451 68.1
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.3e-147 527.3 448 70.3
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 9.3e-146 521.2 442 69.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 9.3e-146 521.2 447 68.9
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-145 520.0 451 67.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 4.6e-145 518.8 444 67.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.0e-145 518.5 451 67.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.0e-144 517.7 451 67.2
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.3e-144 517.3 456 67.8
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.3e-144 516.5 451 66.7
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 3.0e-144 516.2 449 67.5
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 5.1e-144 515.4 447 67.1
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.7e-144 514.6 451 67.4
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 1.1e-143 514.2 457 67.8
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.5e-143 513.8 443 66.6
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 7.3e-143 511.5 443 67.0
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 6.2e-142 508.4 445 67.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.1e-141 507.7 451 66.7
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.4e-141 506.5 445 66.5
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 6.9e-141 505.0 420 70.5
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 9.0e-141 504.6 450 66.7
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.6e-140 503.1 445 64.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 4.5e-140 502.3 451 65.4
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 9.9e-140 501.1 453 66.2
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.3e-139 500.7 445 66.7
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.1e-138 497.7 454 65.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.1e-138 497.7 446 65.0
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 9.3e-138 494.6 445 64.7
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.1e-137 493.4 441 65.5
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.1e-137 493.4 459 64.5
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 6.0e-137 491.9 446 64.6
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.3e-136 490.7 445 66.5
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.3e-136 490.0 443 65.5
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 6.7e-136 488.4 447 63.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.3e-135 485.7 445 65.8
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.3e-134 484.2 445 63.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.4e-133 480.7 441 63.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 2.4e-133 479.9 446 64.3
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 4.0e-133 479.2 446 63.5
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.0e-133 479.2 463 61.3
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.9e-133 478.4 454 63.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.0e-132 476.9 453 63.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.6e-132 476.5 445 62.2
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.9e-131 473.0 465 62.4
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 3.8e-131 472.6 443 63.4
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.5e-131 471.9 441 63.5
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 8.4e-131 471.5 406 67.2
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 7.1e-130 468.4 451 64.7
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.2e-129 467.6 458 61.8
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.6e-129 465.7 443 62.8
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 6.0e-129 465.3 450 63.8
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 8.7e-128 461.5 447 62.9
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.9e-127 460.3 443 61.6
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 9.6e-127 458.0 447 63.3
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.3e-126 457.6 443 61.9
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.6e-126 457.2 698 46.6
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.7e-126 456.1 447 62.0
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.1e-125 452.6 445 62.9
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.2e-124 451.1 443 61.9
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.0e-124 450.3 434 63.8
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.0e-124 450.3 434 63.8
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.5e-122 443.4 480 59.4
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.3e-119 432.6 378 66.7
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 7.4e-119 431.8 443 59.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 5.3e-117 425.6 420 62.9
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.9e-114 417.2 443 60.7
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 4.2e-114 416.0 443 59.1
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-108 396.4 365 64.4
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 4.5e-108 396.0 382 64.4
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.2e-106 389.8 468 52.4
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.0e-99 368.2 366 61.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 9.4e-98 361.7 430 54.9
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.6e-97 359.8 457 50.5
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 4.0e-96 356.3 444 52.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 7.5e-95 352.1 432 53.7
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.8e-94 350.1 327 64.5
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.3e-94 349.0 386 56.0
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.2e-89 334.7 457 48.1
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.7e-89 333.6 469 50.7
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.1e-89 332.4 403 53.1
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.5e-87 327.8 421 53.2
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 4.2e-82 309.7 350 55.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 7.5e-79 298.9 282 62.4
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.8e-78 297.0 272 64.7
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.2e-71 275.0 225 72.0
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.0e-71 274.2 215 76.7
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 7.8e-68 262.3 248 63.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.5e-63 248.1 344 51.5
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 3.9e-59 233.4 290 55.5
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.5e-58 231.5 377 47.5
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 8.1e-57 225.7 250 59.6
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-53 213.4 316 49.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 5.2e-48 196.4 198 57.6
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 5.4e-45 186.4 372 39.2
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.2e-44 185.3 375 36.5
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 2.1e-44 184.5 273 46.2
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-43 181.4 195 58.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 3.0e-43 180.6 456 34.2
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.5e-42 177.6 147 68.7
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.2e-40 169.9 129 72.9
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.5e-39 168.3 173 58.4
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.0e-35 155.6 466 31.5
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 4.0e-32 143.7 164 54.3
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.4e-30 136.0 168 53.0
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 5.4e-29 133.3 134 59.0
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 9.3e-29 132.5 210 46.7
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.7e-22 111.7 148 51.4
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.4e-21 108.6 93 64.5
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.0e-20 103.2 70 84.3
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-19 102.1 67 82.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.4e-16 92.0 107 57.0
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 3.1e-16 90.9 94 61.7
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 5.1e-11 73.6 190 37.9
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.8e-09 67.8 68 61.8
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 2.6e-07 61.2 37 81.1


User provided reference genes

Program Settings