Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1153.3 853 100.0
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1131.3 853 95.1
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1131.3 853 95.1
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-234 816.2 886 77.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 3.5e-190 669.5 864 67.0
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.6e-179 634.0 893 66.4
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.7e-147 526.6 877 62.9
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 6.5e-136 489.2 974 55.6
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 8.2e-131 472.2 812 57.5
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.7e-128 464.5 931 52.3
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.8e-128 463.4 913 53.5
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.1e-126 456.1 917 55.1
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 3.3e-124 450.3 902 56.8
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 5.3e-122 443.0 933 53.2
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.5e-121 441.4 810 59.6
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 1.3e-120 438.3 912 55.3
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.2e-118 431.8 919 51.8
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 3.9e-117 426.8 904 53.9
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.0e-116 424.5 972 50.7
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 9.7e-116 422.2 928 55.0
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.2e-112 411.0 811 53.8
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 5.2e-109 399.8 906 51.4
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.7e-107 394.8 858 54.8
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.8e-107 394.0 896 52.8
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 6.1e-102 376.3 914 52.1
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 4.0e-101 373.6 910 54.1
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 2.6e-100 370.9 911 50.4
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 9.8e-100 369.0 879 55.3
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.8e-98 364.8 864 48.6
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.0e-97 361.3 834 52.4
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.7e-97 360.9 917 51.3
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 3.5e-97 360.5 992 49.7
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.1e-95 355.5 832 49.4
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.2e-94 352.1 900 52.0
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.4e-93 348.6 880 54.3
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 4.0e-93 347.1 914 50.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.4e-92 343.6 923 44.5
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 9.8e-92 342.4 901 48.3
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 3.2e-90 337.4 935 49.5
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.6e-89 335.1 902 50.7
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 2.0e-89 334.7 890 53.3
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 5.0e-88 330.1 897 53.3
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.9e-87 328.2 906 49.4
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 2.1e-86 324.7 920 52.8
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.7e-86 323.6 901 50.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 4.7e-86 323.6 936 48.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 8.9e-85 319.3 885 47.1
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 4.4e-84 317.0 897 50.1
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 5.8e-84 316.6 217 77.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.2e-82 310.8 897 50.8
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 9.2e-82 309.3 925 49.3
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.3e-80 304.7 780 53.6
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 2.3e-80 304.7 754 41.5
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.5e-79 302.0 936 47.1
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.3e-79 300.8 914 51.1
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 3.3e-79 300.8 934 46.6
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 4.7e-78 297.0 930 46.1
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 8.1e-78 296.2 947 52.7
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 6.8e-77 293.1 305 66.6
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 8.3e-75 286.2 217 74.2
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.4e-74 285.4 881 45.7
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 7.1e-74 283.1 917 50.3
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.2e-73 282.3 216 69.9
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 7.8e-73 279.6 209 72.7
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 7.8e-73 279.6 287 60.6
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.7e-72 278.5 884 48.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 3.0e-72 277.7 855 54.2
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.1e-71 275.8 310 56.1
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.1e-71 275.8 953 50.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.5e-71 275.4 925 44.9
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.5e-71 275.4 898 49.1
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 7.3e-71 273.1 212 71.2
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.6e-70 271.9 883 44.8
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 2.3e-69 268.1 907 48.1
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 2.3e-69 268.1 284 61.6
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 6.8e-69 266.5 291 60.8
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.0e-68 265.0 218 67.4
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 4.4e-68 263.8 900 46.4
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 4.4e-68 263.8 317 58.0
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 6.4e-67 260.0 295 57.3
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 6.4e-67 260.0 219 65.8
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 8.4e-67 259.6 217 65.4
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.4e-66 258.8 297 58.9
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 7.1e-66 256.5 215 66.5
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 3.5e-65 254.2 218 65.6
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 4.6e-65 253.8 221 66.1
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.3e-64 251.5 915 49.5
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 2.3e-64 251.5 163 80.4
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.9e-63 248.4 956 43.4
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.9e-63 248.4 836 51.1
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 9.6e-63 246.1 217 65.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 2.8e-62 244.6 216 63.0
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 6.2e-62 243.4 303 55.8
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.1e-61 242.7 927 46.3
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 4.4e-60 237.3 255 57.3
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 7.6e-60 236.5 140 84.3
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.3e-59 235.7 209 64.1
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.1e-58 232.6 142 81.7
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.2e-57 229.2 135 86.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 6.0e-57 226.9 221 60.6
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.7e-56 225.3 220 58.6
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-55 222.6 229 59.0
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.5e-55 221.5 214 58.9
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-55 221.5 241 54.4
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-55 221.5 241 54.4
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.3e-55 221.1 225 57.3
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 9.6e-55 219.5 904 46.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 6.2e-54 216.9 216 60.2
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 1.1e-53 216.1 205 61.5
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.5e-52 212.2 173 69.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 9.9e-52 209.5 173 65.9
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.7e-51 208.8 131 77.9
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 6.4e-51 206.8 224 54.9
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 7.9e-49 199.9 134 76.1
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 6.6e-48 196.8 171 64.3
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.1e-47 196.1 168 64.9
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 8.4e-43 179.9 198 54.5
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 8.4e-35 153.3 140 60.7
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 1.6e-33 149.1 381 44.4
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.8e-32 145.6 134 61.9
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 8.7e-32 143.3 182 48.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.3e-30 139.4 127 59.8
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 3.1e-29 134.8 411 40.6
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.9e-23 115.5 150 47.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 4.8e-22 110.9 147 45.6
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.3e-19 102.8 86 68.6
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.2e-19 102.1 91 67.0
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 3.1e-13 81.6 57 71.9
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 1.5e-12 79.3 412 36.9
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.6e-09 69.3 121 37.2
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 2.1e-09 68.9 50 70.0


User provided reference genes

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