Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 1.3e-58 229.6 123 100.0
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 1.3e-58 229.6 123 100.0
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 7.6e-46 187.2 100 98.0
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.4e-31 139.0 127 69.3
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 8.2e-24 114.0 108 66.7
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.1e-23 112.1 103 66.0
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.7e-21 106.3 102 69.6
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.2e-21 105.9 136 54.4
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 2.2e-21 105.9 137 53.3
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 2.2e-21 105.9 152 48.0
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.9e-20 102.8 132 53.0
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.5e-20 101.3 103 60.2
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 5.5e-20 101.3 121 56.2
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 2.7e-19 99.0 130 51.5
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 4.6e-19 98.2 134 50.0
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 6.1e-19 97.8 131 51.9
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 2.3e-18 95.9 122 54.1
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.3e-18 95.9 122 54.1
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.3e-18 95.9 132 52.3
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.0e-18 95.5 105 61.0
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.9e-17 92.8 135 48.1
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 3.3e-17 92.0 165 44.8
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 3.3e-17 92.0 114 53.5
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 7.4e-17 90.9 135 47.4
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 7.4e-17 90.9 98 58.2
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.7e-17 90.5 144 46.5
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.8e-16 89.0 144 45.8
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.7e-16 88.6 129 48.8
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.3e-16 87.8 135 45.9
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.1e-15 87.0 103 54.4
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.4e-15 85.9 103 54.4
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.4e-15 85.9 107 53.3
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 2.4e-15 85.9 166 42.8
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 4.1e-15 85.1 115 51.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 4.1e-15 85.1 108 59.3
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.5e-14 83.2 111 51.4
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 5.9e-14 81.3 131 45.0
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.2e-13 79.3 103 52.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.2e-13 79.3 135 46.7
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 8.5e-13 77.4 129 42.6
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 8.5e-13 77.4 107 52.3
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.1e-12 77.0 131 45.0
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 1.4e-12 76.6 95 53.7
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 3.2e-12 75.5 138 41.3
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 5.5e-12 74.7 111 47.7
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 9.4e-12 73.9 124 45.2
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 1.2e-11 73.6 130 45.4
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 3.6e-11 72.0 101 49.5
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 3.6e-11 72.0 101 49.5
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 4.7e-11 71.6 97 51.5
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 7.9e-11 70.9 183 37.2
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.0e-10 70.5 137 40.9
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.4e-10 70.1 91 49.5
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.4e-10 70.1 91 49.5
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 1.4e-10 70.1 130 43.1
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.4e-10 70.1 91 52.7
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.8e-10 69.7 103 46.6
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.0e-10 68.9 86 53.5
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.0e-10 68.9 86 48.8
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 6.7e-10 67.8 175 37.7
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 8.8e-10 67.4 66 59.1
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.1e-09 67.0 163 37.4
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 1.5e-09 66.6 122 43.4
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.5e-09 66.6 98 51.0
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 3.3e-09 65.5 87 52.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 3.3e-09 65.5 149 37.6
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 9.7e-09 63.9 83 53.0
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 9.7e-09 63.9 94 50.0
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.3e-08 63.5 97 45.4
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 3.7e-08 62.0 104 43.3
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 6.3e-08 61.2 75 54.7
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 8.2e-08 60.8 116 43.1
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.1e-07 60.5 94 47.9
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.1e-07 60.5 163 35.6
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 4.1e-07 58.5 94 42.6
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 7.0e-07 57.8 168 33.3
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 9.1e-07 57.4 100 44.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.5e-06 56.6 117 34.2
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 2.0e-06 56.2 117 34.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 2.0e-06 56.2 117 35.0
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 2.0e-06 56.2 117 35.0
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 2.0e-06 56.2 93 44.1
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 2.0e-06 56.2 100 40.0
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 3.4e-06 55.5 96 45.8
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 3.4e-06 55.5 117 34.2
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 5.9e-06 54.7 88 46.6


User provided reference genes

Program Settings