Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 0.0e+00 1133.2 598 100.0
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 0.0e+00 1089.7 598 96.5
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.1e-288 996.1 597 86.3
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.2e-283 977.6 598 85.8
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.4e-281 972.6 598 85.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.1e-272 943.0 600 82.7
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.2e-267 924.9 598 80.9
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.6e-266 921.4 598 80.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.0e-265 918.3 598 80.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 6.8e-265 917.1 598 79.9
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.5e-264 916.0 593 83.5
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.5e-264 916.0 598 79.9
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 3.4e-264 914.8 598 80.1
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.3e-263 912.9 598 79.6
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.7e-263 912.5 598 80.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 4.8e-263 911.0 598 79.9
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.3e-263 910.6 593 80.6
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 8.3e-263 910.2 598 80.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.1e-262 909.8 593 80.6
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.4e-262 909.4 598 78.9
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 4.1e-262 907.9 596 80.0
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 7.0e-262 907.1 592 80.4
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 9.1e-262 906.7 598 79.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.1e-262 906.7 593 80.4
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 9.1e-262 906.7 598 78.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.6e-261 906.0 592 81.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.6e-261 906.0 619 77.9
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.5e-261 904.4 598 79.1
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.2e-260 902.1 578 81.8
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 2.9e-260 901.7 590 79.7
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.9e-260 901.7 572 82.9
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.0e-260 901.0 603 77.9
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.5e-259 899.4 593 78.6
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.9e-259 899.0 578 81.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.9e-259 899.0 593 78.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 5.5e-259 897.5 592 80.1
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.2e-259 897.1 598 78.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 9.4e-259 896.7 594 80.3
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 9.4e-259 896.7 591 78.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.4e-259 896.7 593 79.8
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.6e-258 894.8 598 79.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 4.7e-258 894.4 598 79.6
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.8e-257 892.5 598 79.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 3.0e-257 891.7 598 79.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.2e-257 891.0 591 79.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 6.8e-257 890.6 590 78.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.0e-256 889.0 598 78.6
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.0e-256 889.0 591 80.0
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.6e-256 888.6 600 79.5
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 3.4e-256 888.3 591 78.0
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.4e-256 887.9 595 79.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.4e-256 887.9 591 79.9
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.7e-256 887.5 593 77.9
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 5.7e-256 887.5 592 78.5
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 7.5e-256 887.1 591 77.8
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.8e-256 886.7 591 77.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.3e-255 886.3 629 74.7
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.7e-255 884.8 593 78.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.3e-255 884.0 593 78.6
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 8.3e-255 883.6 590 78.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 8.3e-255 883.6 601 78.0
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 8.3e-255 883.6 593 78.1
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 8.3e-255 883.6 595 76.5
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.8e-254 882.5 592 77.5
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.1e-254 881.3 593 77.6
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 9.1e-254 880.2 593 77.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.0e-253 879.0 598 77.8
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 7.7e-253 877.1 593 77.6
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 7.7e-253 877.1 594 77.6
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 7.7e-253 877.1 595 76.3
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.7e-252 875.9 595 77.0
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.9e-252 875.2 594 77.3
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 5.6e-251 870.9 566 79.3
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 7.2e-251 870.5 595 78.5
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.8e-250 868.6 566 80.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.8e-250 868.6 601 75.9
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 6.1e-250 867.5 598 76.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 3.0e-249 865.1 595 75.3
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 5.2e-249 864.4 593 76.1
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.0e-248 862.4 596 75.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.6e-248 862.1 592 75.5
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 5.7e-248 860.9 593 75.5
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 5.7e-248 860.9 596 75.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.7e-247 859.4 595 75.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.7e-247 859.4 508 86.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.2e-247 859.0 593 75.9
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 2.2e-247 859.0 595 76.6
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 4.9e-247 857.8 592 75.8
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.4e-246 854.4 593 76.1
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 7.0e-246 854.0 598 75.9
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.7e-245 852.0 593 75.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.5e-245 851.7 698 66.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 4.6e-245 851.3 594 74.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.6e-245 851.3 596 76.3
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-244 850.1 595 75.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.0e-244 850.1 595 74.6
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.0e-244 850.1 700 67.4
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.3e-244 849.0 593 75.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 3.0e-244 848.6 590 75.1
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.9e-244 848.2 511 86.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 3.9e-244 848.2 600 75.5
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.9e-244 848.2 593 74.4
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 5.0e-244 847.8 594 74.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.9e-243 845.9 593 74.7
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.3e-243 845.1 593 74.0
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.8e-242 842.0 600 74.8
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 4.7e-242 841.3 594 74.7
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 6.2e-242 840.9 602 74.1
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 6.2e-242 840.9 602 73.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 6.8e-241 837.4 596 74.3
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 7.5e-240 833.9 600 74.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 7.0e-238 827.4 582 75.1
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.1e-225 786.9 571 73.0
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.4e-222 776.5 605 69.9
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 7.8e-221 770.8 596 69.0
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.3e-220 770.0 582 70.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.8e-218 762.3 594 67.7
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.9e-215 752.3 592 68.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.8e-208 728.0 593 66.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 7.6e-208 727.6 596 67.1
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.0e-200 703.0 502 73.9
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 3.9e-196 688.7 433 84.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.5e-189 665.6 507 73.0
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.3e-187 658.7 448 77.7
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.7e-181 639.4 478 69.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.5e-163 580.5 528 61.6
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.7e-162 575.9 383 78.9
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.5e-150 537.3 372 75.0
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.8e-148 528.1 400 73.2
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.4e-147 525.8 579 57.7
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 7.7e-144 515.0 519 53.9
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.9e-142 510.4 319 84.3
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.4e-129 467.6 310 80.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.5e-115 421.0 252 84.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 6.4e-114 415.6 535 47.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.2e-100 369.4 228 87.7
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 3.4e-99 366.7 246 76.0
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 7.6e-99 365.5 571 41.2
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-80 305.1 243 68.3
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 9.3e-73 278.9 210 69.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 7.9e-64 249.2 257 51.4
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.7e-61 240.4 318 43.1
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 3.4e-51 207.2 114 86.8
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.3e-50 205.3 130 80.8
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.2e-49 200.7 266 44.7
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 3.2e-33 147.5 137 60.6
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.9e-26 124.4 112 58.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.6e-24 117.5 186 43.0
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-23 115.9 205 41.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.8e-23 115.2 110 57.3
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.4e-20 103.6 50 92.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.0e-18 99.4 85 65.9
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-14 84.7 65 69.2
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-11 75.1 65 66.2
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 5.0e-10 70.5 57 56.1
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 6.6e-10 70.1 70 58.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 6.6e-10 70.1 71 57.7
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 7.3e-09 66.6 60 60.0
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 7.3e-09 66.6 71 54.9
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.8e-08 64.7 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.8e-08 64.7 30 93.3
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.1e-07 62.8 102 42.2
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 1.5e-06 58.9 75 52.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.6e-06 58.2 248 27.8


User provided reference genes

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