Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16898 Davidia involucrata HOM05D052718 ORTHO05D004937 1.7e-108 396.0 191 100.0
Dinv33726 Davidia involucrata HOM05D052718 ORTHO05D004937 4.9e-68 261.5 125 97.6
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 3.3e-16 89.4 78 61.5
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 4.5e-13 79.0 88 52.3
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 4.2e-11 72.4 108 44.4
Peaxi162Scf00027g02615 Petunia axillaris HOM05D004367 ORTHO05D004937 5.5e-11 72.0 81 54.3
Dinv20794 Davidia involucrata HOM05D004367 ORTHO05D004937 7.2e-11 71.6 60 65.0
MELO3C023043.2 Cucumis melo HOM05D000655 ORTHO05D001635 2.1e-10 70.1 40 77.5
CsaV3_2G012430 Cucumis sativus L. HOM05D000655 ORTHO05D001635 2.1e-10 70.1 40 77.5
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 2.1e-10 70.1 91 47.3
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 2.7e-10 69.7 83 48.2
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 2.7e-10 69.7 83 47.0
PGR031G0393 Punica granatum HOM05D000655 ORTHO05D001635 3.6e-10 69.3 40 82.5
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 3.6e-10 69.3 91 46.2
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 3.6e-10 69.3 91 46.2
Potri.008G171700 Populus trichocarpa HOM05D000655 ORTHO05D001635 4.7e-10 68.9 40 77.5
TWI73G0789 Tripterygium wilfordii HOM05D000655 ORTHO05D001635 6.1e-10 68.6 38 84.2
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 1.0e-09 67.8 75 52.0
Hma1.2p1_2210F.1_g317160 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 1.0e-09 67.8 85 47.1
Solyc09g090680.3 Solanum lycopersicum HOM05D000655 ORTHO05D001635 1.0e-09 67.8 40 77.5
Sopen09g033620 Solanum pennellii HOM05D000655 ORTHO05D001635 1.0e-09 67.8 40 77.5
PGSC0003DMG400017195 Solanum tuberosum HOM05D000655 ORTHO05D001635 1.0e-09 67.8 40 77.5
TAR633G0807 Trochodendron aralioides HOM05D000655 ORTHO05D001635 1.0e-09 67.8 40 72.5
Manes.03G159200 Manihot esculenta HOM05D000655 ORTHO05D001635 1.4e-09 67.4 39 82.1
CSS0032328 Camellia sinensis var. sinensis HOM05D000655 ORTHO05D001635 1.8e-09 67.0 40 75.0
CANSAT78G0277 Cannabis sativa HOM05D000655 ORTHO05D001635 1.8e-09 67.0 38 81.6
ClCG06G007270 Citrullus lanatus HOM05D000655 ORTHO05D001635 2.3e-09 66.6 38 81.6
Cc03_g06270 Coffea canephora HOM05D000655 ORTHO05D001635 3.0e-09 66.2 39 79.5
Eucgr.H00130 Eucalyptus grandis HOM05D000655 ORTHO05D001635 3.0e-09 66.2 38 81.6
TWI53G1215 Tripterygium wilfordii HOM05D000655 ORTHO05D001635 5.2e-09 65.5 40 77.5
arahy.Tifrunner.gnm1.ann1.T5QG8Q Arachis hypogaea HOM05D000655 ORTHO05D001635 6.8e-09 65.1 35 88.6
Ciclev10005547m.g Citrus clementina HOM05D000655 ORTHO05D001635 6.8e-09 65.1 40 75.0
arahy.Tifrunner.gnm1.ann1.3SR464 Arachis hypogaea HOM05D000655 ORTHO05D001635 8.8e-09 64.7 35 88.6
Cpa.g.sc44.2 Carica papaya HOM05D000655 ORTHO05D001635 8.8e-09 64.7 36 83.3
CiPaw.01G178200 Carya illinoinensis HOM05D000655 ORTHO05D001635 8.8e-09 64.7 35 88.6
Nitab4.5_0002751g0040 Nicotiana tabacum HOM05D000655 ORTHO05D001635 8.8e-09 64.7 38 81.6
Oeu037693.1 Olea europaea HOM05D000655 ORTHO05D001635 8.8e-09 64.7 36 86.1
Solyc03g005690.3 Solanum lycopersicum HOM05D000655 ORTHO05D001635 8.8e-09 64.7 40 72.5
Sopen03g001700 Solanum pennellii HOM05D000655 ORTHO05D001635 8.8e-09 64.7 40 72.5
THA.LOC104816007 Tarenaya hassleriana HOM05D000655 ORTHO05D001635 8.8e-09 64.7 38 78.9
Lj5g0002147 Lotus japonicus HOM05D000655 ORTHO05D001635 1.5e-08 63.9 38 81.6
Sabra10G0041400 Salix brachista HOM05D000655 ORTHO05D001635 1.5e-08 63.9 47 68.1
Sc13g0006210 Simmondsia chinensis HOM05D000655 ORTHO05D001635 1.5e-08 63.9 38 78.9
Duzib212G0872 Durio zibethinus HOM05D000655 ORTHO05D001635 2.0e-08 63.5 39 76.9
Migut.G00549 Erythranthe guttata HOM05D000655 ORTHO05D001635 2.6e-08 63.2 40 75.0
Actinidia11372 Actinidia chinensis HOM05D000655 ORTHO05D001635 3.4e-08 62.8 38 73.7
Psat6g131440 Pisum sativum HOM05D000655 ORTHO05D001635 3.4e-08 62.8 38 76.3
CiPaw.02G107200 Carya illinoinensis HOM05D000655 ORTHO05D001635 4.4e-08 62.4 36 80.6
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 4.4e-08 62.4 81 46.9
DCAR_024292 Daucus carota HOM05D000655 ORTHO05D001635 5.7e-08 62.0 36 80.6
Lalb_Chr21g0312511 Lupinus albus HOM05D000655 ORTHO05D001635 5.7e-08 62.0 38 73.7
Dinv29804 Davidia involucrata HOM05D000655 ORTHO05D001635 7.5e-08 61.6 37 78.4
Ca_09802_v3 Cicer arietinum L. HOM05D000655 ORTHO05D001635 9.8e-08 61.2 38 73.7
Phvul.007G231300 Phaseolus vulgaris HOM05D000655 ORTHO05D001635 9.8e-08 61.2 38 73.7
Oeu011223.1 Olea europaea HOM05D000655 ORTHO05D001635 1.3e-07 60.8 38 76.3
vmacro08553 Vaccinium macrocarpon HOM05D000655 ORTHO05D001635 1.3e-07 60.8 44 65.9
Gohir.D10G158566 Gossypium hirsutum HOM05D000655 ORTHO05D001635 1.7e-07 60.5 38 73.7
Rhsim04G0172500 Rhododendron simsii HOM05D000655 ORTHO05D001635 1.7e-07 60.5 38 71.1
THA.LOC104801065 Tarenaya hassleriana HOM05D000655 ORTHO05D001635 1.7e-07 60.5 36 77.8
TAR362G0049 Trochodendron aralioides HOM05D000655 ORTHO05D001635 1.7e-07 60.5 38 71.1
MD13G1221600 Malus domestica HOM05D000655 ORTHO05D001635 2.2e-07 60.1 36 80.6
Prupe.1G048300 Prunus persica HOM05D000655 ORTHO05D001635 2.2e-07 60.1 36 80.6
Actinidia39929 Actinidia chinensis HOM05D000655 ORTHO05D001635 2.8e-07 59.7 38 71.1
DCAR_027348 Daucus carota HOM05D000655 ORTHO05D001635 2.8e-07 59.7 35 80.0
Lalb_Chr01g0020311 Lupinus albus HOM05D000655 ORTHO05D001635 2.8e-07 59.7 38 73.7
Sed0011206 Sechium edule HOM05D000655 ORTHO05D001635 2.8e-07 59.7 37 73.0
Atru.chr4.1918 Acer truncatum HOM05D000655 ORTHO05D001635 3.7e-07 59.3 36 75.0
CAN.G638.42 Capsicum annuum HOM05D000655 ORTHO05D001635 3.7e-07 59.3 38 71.1
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 3.7e-07 59.3 75 50.7
Glyma.10G190500 Glycine max HOM05D000655 ORTHO05D001635 3.7e-07 59.3 37 75.7
COL.COLO4_15961 Corchorus olitorius HOM05D000655 ORTHO05D001635 4.8e-07 58.9 37 73.0
Hund11938 Selenicereus undatus HOM05D000655 ORTHO05D001635 4.8e-07 58.9 40 70.0
VMungo0720G2726 Vigna mungo HOM05D000655 ORTHO05D001635 4.8e-07 58.9 35 80.0
PSO135G0843 Papaver somniferum HOM05D000655 ORTHO05D001635 6.3e-07 58.5 34 73.5
PSO384G2659 Papaver somniferum HOM05D000655 ORTHO05D001635 6.3e-07 58.5 34 73.5
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 8.3e-07 58.2 85 42.4
Lalb_Chr02g0150701 Lupinus albus HOM05D000655 ORTHO05D001635 8.3e-07 58.2 37 78.4
MD16G1226300 Malus domestica HOM05D000655 ORTHO05D001635 8.3e-07 58.2 36 75.0
Thecc.04G263600 Theobroma cacao HOM05D000655 ORTHO05D001635 8.3e-07 58.2 39 71.8
Duzib151G0844 Durio zibethinus HOM05D000655 ORTHO05D001635 1.1e-06 57.8 38 73.7
FvH4_4g04620 Fragaria vesca HOM05D000655 ORTHO05D001635 1.1e-06 57.8 35 80.0
FAN12G3666 Fragaria x ananassa HOM05D000655 ORTHO05D001635 1.1e-06 57.8 35 80.0
FAN17G1294 Fragaria x ananassa HOM05D000655 ORTHO05D001635 1.1e-06 57.8 35 80.0
Gorai.011G178200 Gossypium raimondii HOM05D000655 ORTHO05D001635 1.1e-06 57.8 41 70.7
RcHm_v2.0_Chr4g0395391 Rosa chinensis HOM05D000655 ORTHO05D001635 1.1e-06 57.8 35 80.0
SGA_v2.0_scaffold31G12630 Striga asiatica HOM05D000655 ORTHO05D001635 1.1e-06 57.8 38 68.4
CSS0032886 Camellia sinensis var. sinensis HOM05D000655 ORTHO05D001635 1.4e-06 57.4 37 70.3
ECA236G4140 Erigeron canadensis HOM05D000655 ORTHO05D001635 1.4e-06 57.4 36 69.4
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 1.4e-06 57.4 92 40.2
Lj3C648T4 Lonicera japonica HOM05D000655 ORTHO05D001635 1.4e-06 57.4 34 76.5
MELO3C006379.2 Cucumis melo HOM05D000655 ORTHO05D001635 1.8e-06 57.0 36 72.2
CsaV3_3G011720 Cucumis sativus L. HOM05D000655 ORTHO05D001635 1.8e-06 57.0 36 72.2
Medtr1g073320 Medicago truncatula HOM05D000655 ORTHO05D001635 1.8e-06 57.0 40 70.0
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 1.8e-06 57.0 63 49.2
Sed0011633 Sechium edule HOM05D000655 ORTHO05D001635 1.8e-06 57.0 35 74.3
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 2.4e-06 56.6 27 85.2
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.4e-06 56.6 67 52.2
Haze_11456 Corylus avellana HOM05D000655 ORTHO05D001635 3.1e-06 56.2 32 84.4
Glyma.20G200200 Glycine max HOM05D000655 ORTHO05D001635 3.1e-06 56.2 35 74.3
Nn1g02955 Nelumbo nucifera HOM05D000655 ORTHO05D001635 3.1e-06 56.2 36 66.7
MSTRG.24661 Avicennia marina HOM05D000655 ORTHO05D001635 4.1e-06 55.8 36 75.0
Gorai.006G251100 Gossypium raimondii HOM05D000655 ORTHO05D001635 4.1e-06 55.8 37 64.9
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 4.1e-06 55.8 93 38.7
Psat6g107400 Pisum sativum HOM05D000655 ORTHO05D001635 4.1e-06 55.8 38 71.1
QL06p020977 Quercus lobata HOM05D000655 ORTHO05D001635 4.1e-06 55.8 33 81.8
Gohir.A09G227400 Gossypium hirsutum HOM05D000655 ORTHO05D001635 5.4e-06 55.5 37 64.9
Phvul.L001744 Phaseolus vulgaris HOM05D000655 ORTHO05D001635 5.4e-06 55.5 33 78.8
AL1G14170 Arabidopsis lyrata HOM05D000655 ORTHO05D001635 7.0e-06 55.1 36 75.0
AT1G04520 Arabidopsis thaliana HOM05D000655 ORTHO05D001635 7.0e-06 55.1 36 75.0
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 7.0e-06 55.1 81 43.2
CARHR003860 Cardamine hirsuta HOM05D000655 ORTHO05D001635 9.1e-06 54.7 36 72.2
Duzib052G1064 Durio zibethinus HOM05D000655 ORTHO05D001635 9.1e-06 54.7 41 65.9
Os03g0140500 Oryza sativa ssp. japonica HOM05D000655 ORTHO05D001635 9.1e-06 54.7 38 63.2
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 9.1e-06 54.7 87 40.2


User provided reference genes

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