Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16868 Davidia involucrata HOM05D000086 ORTHO05D184483 1.2e-27 125.9 71 100.0
Nn5g29979 Nelumbo nucifera HOM05D000086 ORTHO05D000431 3.7e-13 77.8 41 82.9
CSS0014171 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000431 6.4e-13 77.0 40 77.5
Dinv13240 Davidia involucrata HOM05D000086 ORTHO05D000431 1.4e-12 75.9 42 88.1
Manes.07G037700 Manihot esculenta HOM05D000086 ORTHO05D000431 4.1e-12 74.3 41 80.5
Dinv08872 Davidia involucrata HOM05D000086 ORTHO05D000431 1.2e-11 72.8 41 73.2
Actinidia01863 Actinidia chinensis HOM05D000086 ORTHO05D000431 2.1e-11 72.0 39 82.1
Manes.10G103400 Manihot esculenta HOM05D000086 ORTHO05D000431 2.1e-11 72.0 40 77.5
Manes.18G141808 Manihot esculenta HOM05D000086 ORTHO05D000431 2.1e-11 72.0 40 77.5
Ciclev10025698m.g Citrus clementina HOM05D000086 ORTHO05D000431 2.7e-11 71.6 41 75.6
Nitab4.5_0000862g0030 Nicotiana tabacum HOM05D000086 ORTHO05D000431 3.5e-11 71.2 39 76.9
Actinidia28205 Actinidia chinensis HOM05D000086 ORTHO05D000431 4.6e-11 70.9 41 68.3
Prupe.8G066400 Prunus persica HOM05D000086 ORTHO05D000431 4.6e-11 70.9 41 70.7
Actinidia24011 Actinidia chinensis HOM05D000086 ORTHO05D000431 7.8e-11 70.1 41 63.4
Actinidia26571 Actinidia chinensis HOM05D000086 ORTHO05D000431 7.8e-11 70.1 41 63.4
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 7.8e-11 70.1 41 70.7
Nitab4.5_0000606g0040 Nicotiana tabacum HOM05D000086 ORTHO05D000431 7.8e-11 70.1 39 76.9
Oeu000876.1 Olea europaea HOM05D000086 ORTHO05D000431 7.8e-11 70.1 39 76.9
Ciclev10005244m.g Citrus clementina HOM05D000086 ORTHO05D000431 1.0e-10 69.7 41 70.7
Duzib187G0211 Durio zibethinus HOM05D000086 ORTHO05D000431 1.0e-10 69.7 41 73.2
Thecc.01G094900 Theobroma cacao HOM05D000086 ORTHO05D000431 1.0e-10 69.7 43 74.4
Dinv24165 Davidia involucrata HOM05D000086 ORTHO05D000431 2.3e-10 68.6 41 68.3
Lj4A729T42 Lonicera japonica HOM05D000086 ORTHO05D000431 2.3e-10 68.6 39 74.4
Manes.12G129600 Manihot esculenta HOM05D000086 ORTHO05D000431 2.3e-10 68.6 41 68.3
Aqoxy6G00699 Aquilegia oxysepala HOM05D000086 ORTHO05D000431 3.0e-10 68.2 42 69.0
CiPaw.04G104200 Carya illinoinensis HOM05D000086 ORTHO05D000431 3.0e-10 68.2 41 70.7
Hma1.2p1_0784F.1_g217310 Hydrangea macrophylla HOM05D000086 ORTHO05D000431 3.0e-10 68.2 41 65.9
Peaxi162Scf00237g00125 Petunia axillaris HOM05D000086 ORTHO05D000431 3.0e-10 68.2 39 76.9
MSTRG.15706 Avicennia marina HOM05D000086 ORTHO05D000431 3.9e-10 67.8 39 71.8
Gohir.A12G016100 Gossypium hirsutum HOM05D000086 ORTHO05D000431 3.9e-10 67.8 41 68.3
Gohir.D12G016400 Gossypium hirsutum HOM05D000086 ORTHO05D000431 3.9e-10 67.8 41 68.3
Gorai.008G016600 Gossypium raimondii HOM05D000086 ORTHO05D000431 3.9e-10 67.8 41 68.3
Nn1g05473 Nelumbo nucifera HOM05D000086 ORTHO05D000431 3.9e-10 67.8 39 74.4
Oeu012393.1 Olea europaea HOM05D000086 ORTHO05D000431 3.9e-10 67.8 38 76.3
Oeu032370.1 Olea europaea HOM05D000086 ORTHO05D000431 5.1e-10 67.4 38 73.7
RhsimUnG0105300 Rhododendron simsii HOM05D000086 ORTHO05D000431 5.1e-10 67.4 41 65.9
COL.COLO4_32324 Corchorus olitorius HOM05D000086 ORTHO05D000431 6.6e-10 67.0 41 68.3
PGSC0003DMG400030821 Solanum tuberosum HOM05D000086 ORTHO05D000431 6.6e-10 67.0 38 73.7
TAR381G1377 Trochodendron aralioides HOM05D000086 ORTHO05D000431 6.6e-10 67.0 41 68.3
Cpa.g.sc55.65 Carica papaya HOM05D000086 ORTHO05D000431 8.6e-10 66.6 39 71.8
Duzib248G0914 Durio zibethinus HOM05D000086 ORTHO05D000431 8.6e-10 66.6 41 65.9
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 1.1e-09 66.2 39 69.2
Atru.chr6.1222 Acer truncatum HOM05D000086 ORTHO05D000431 1.5e-09 65.9 40 67.5
Rhsim10G0169000 Rhododendron simsii HOM05D000086 ORTHO05D000431 1.5e-09 65.9 39 71.8
TWI23G0195 Tripterygium wilfordii HOM05D000086 ORTHO05D000431 1.5e-09 65.9 41 65.9
GSVIVG01009096001 Vitis vinifera HOM05D000086 ORTHO05D000431 1.5e-09 65.9 39 69.2
COL.COLO4_00217 Corchorus olitorius HOM05D000086 ORTHO05D000431 1.9e-09 65.5 46 63.0
Hma1.2p1_0522F.1_g171890 Hydrangea macrophylla HOM05D000086 ORTHO05D000431 1.9e-09 65.5 41 68.3
Rhsim06G0076900 Rhododendron simsii HOM05D000086 ORTHO05D000431 1.9e-09 65.5 39 69.2
PGSC0003DMG400016217 Solanum tuberosum HOM05D000086 ORTHO05D000431 1.9e-09 65.5 42 73.8
Thecc.02G133000 Theobroma cacao HOM05D000086 ORTHO05D000431 1.9e-09 65.5 41 63.4
TAR628G0774 Trochodendron aralioides HOM05D000086 ORTHO05D000431 1.9e-09 65.5 41 65.9
Nitab4.5_0002334g0020 Nicotiana tabacum HOM05D000086 ORTHO05D000431 2.5e-09 65.1 39 66.7
TWI74G1689 Tripterygium wilfordii HOM05D000086 ORTHO05D000431 2.5e-09 65.1 41 68.3
Cc02_g21130 Coffea canephora HOM05D000086 ORTHO05D000431 3.3e-09 64.7 40 67.5
Cc10_g06590 Coffea canephora HOM05D000086 ORTHO05D000431 3.3e-09 64.7 39 64.1
Dinv42665 Davidia involucrata HOM05D000086 ORTHO05D000431 3.3e-09 64.7 39 66.7
Duzib132G0563 Durio zibethinus HOM05D000086 ORTHO05D000431 3.3e-09 64.7 41 65.9
Gohir.A04G114700 Gossypium hirsutum HOM05D000086 ORTHO05D000431 3.3e-09 64.7 39 66.7
Gorai.012G143100 Gossypium raimondii HOM05D000086 ORTHO05D000431 3.3e-09 64.7 39 66.7
QL06p047938 Quercus lobata HOM05D000086 ORTHO05D000431 3.3e-09 64.7 41 63.4
Nitab4.5_0003374g0060 Nicotiana tabacum HOM05D000086 ORTHO05D000431 4.3e-09 64.3 41 61.0
Peaxi162Scf00160g00117 Petunia axillaris HOM05D000086 ORTHO05D000431 4.3e-09 64.3 40 60.0
RhsimUnG0187500 Rhododendron simsii HOM05D000086 ORTHO05D000431 4.3e-09 64.3 41 61.0
FvH4_1g20164 Fragaria vesca HOM05D000086 ORTHO05D000431 5.6e-09 63.9 41 65.9
FAN19G0666 Fragaria x ananassa HOM05D000086 ORTHO05D000431 5.6e-09 63.9 41 65.9
FAN26G0919 Fragaria x ananassa HOM05D000086 ORTHO05D000431 5.6e-09 63.9 41 65.9
FAN26G2743 Fragaria x ananassa HOM05D000086 ORTHO05D000431 5.6e-09 63.9 41 65.9
FAN28G1256 Fragaria x ananassa HOM05D000086 ORTHO05D000431 5.6e-09 63.9 41 65.9
Prupe.6G194300 Prunus persica HOM05D000086 ORTHO05D000431 5.6e-09 63.9 41 68.3
Sopen04g029750 Solanum pennellii HOM05D000086 ORTHO05D000431 5.6e-09 63.9 38 68.4
Cfa005686 Carpinus fangiana HOM05D000086 ORTHO05D000431 7.3e-09 63.5 40 67.5
Lsat_1_v5_gn_2_65961 Lactuca sativa HOM05D000086 ORTHO05D000431 7.3e-09 63.5 41 63.4
Manes.13G097400 Manihot esculenta HOM05D000086 ORTHO05D000431 7.3e-09 63.5 41 63.4
PGR102G2551 Punica granatum HOM05D000086 ORTHO05D000431 7.3e-09 63.5 40 67.5
TAR625G0609 Trochodendron aralioides HOM05D000086 ORTHO05D000431 7.3e-09 63.5 41 63.4
Solyc11g010330.3 Solanum lycopersicum HOM05D000086 ORTHO05D000431 9.5e-09 63.2 42 71.4
TWI59G0424 Tripterygium wilfordii HOM05D000086 ORTHO05D000431 9.5e-09 63.2 41 63.4
CANSAT01G0420 Cannabis sativa HOM05D000086 ORTHO05D000431 1.2e-08 62.8 41 65.9
Gohir.A12G084000 Gossypium hirsutum HOM05D000086 ORTHO05D000431 1.2e-08 62.8 42 69.0
Gohir.D12G081900 Gossypium hirsutum HOM05D000086 ORTHO05D000431 1.2e-08 62.8 42 69.0
Gorai.008G091200 Gossypium raimondii HOM05D000086 ORTHO05D000431 1.2e-08 62.8 42 69.0
MD15G1317400 Malus domestica HOM05D000086 ORTHO05D000431 1.2e-08 62.8 41 65.9
Nitab4.5_0005401g0040 Nicotiana tabacum HOM05D000086 ORTHO05D000431 1.2e-08 62.8 39 61.5
THA.LOC104807828 Tarenaya hassleriana HOM05D000086 ORTHO05D000431 1.2e-08 62.8 39 61.5
VMungo0540G2029 Vigna mungo HOM05D000086 ORTHO05D000431 1.2e-08 62.8 39 61.5
GSVIVG01015682001 Vitis vinifera HOM05D000086 ORTHO05D000431 1.2e-08 62.8 41 63.4
Cc07_g14510 Coffea canephora HOM05D000086 ORTHO05D000431 1.6e-08 62.4 39 66.7
HanXRQChr14g0445121 Helianthus annuus HOM05D000086 ORTHO05D000431 1.6e-08 62.4 41 65.9
Peaxi162Scf00569g00032 Petunia axillaris HOM05D000086 ORTHO05D000431 1.6e-08 62.4 39 61.5
RcHm_v2.0_Chr2g0112241 Rosa chinensis HOM05D000086 ORTHO05D000431 1.6e-08 62.4 41 63.4
CiPaw.06G156200 Carya illinoinensis HOM05D000086 ORTHO05D000431 2.1e-08 62.0 39 69.2
DCAR_012877 Daucus carota HOM05D000086 ORTHO05D000431 2.1e-08 62.0 38 65.8
PSO675G5884 Papaver somniferum HOM05D000086 ORTHO05D000431 2.1e-08 62.0 38 63.2
CiPaw.05G032000 Carya illinoinensis HOM05D000086 ORTHO05D000431 2.8e-08 61.6 41 65.9
Gohir.D04G156100 Gossypium hirsutum HOM05D000086 ORTHO05D000431 2.8e-08 61.6 39 64.1
QL11p023242 Quercus lobata HOM05D000086 ORTHO05D000431 2.8e-08 61.6 41 63.4
Solyc04g074790.3 Solanum lycopersicum HOM05D000086 ORTHO05D000431 2.8e-08 61.6 38 65.8
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 2.8e-08 61.6 39 61.5
Actinidia28037 Actinidia chinensis HOM05D000086 ORTHO05D000431 3.6e-08 61.2 40 65.0
Lalb_Chr18g0060471 Lupinus albus HOM05D000086 ORTHO05D000431 3.6e-08 61.2 40 57.5
MD01G1036900 Malus domestica HOM05D000086 ORTHO05D000431 4.7e-08 60.8 41 61.0
CANSAT11G1436 Cannabis sativa HOM05D000086 ORTHO05D000431 6.2e-08 60.5 41 61.0
Haze_10564 Corylus avellana HOM05D000086 ORTHO05D000431 6.2e-08 60.5 42 66.7
Haze_24826 Corylus avellana HOM05D000086 ORTHO05D000431 6.2e-08 60.5 41 61.0
Haze_24831 Corylus avellana HOM05D000086 ORTHO05D000431 6.2e-08 60.5 41 61.0
Peaxi162Scf00207g00067 Petunia axillaris HOM05D000086 ORTHO05D000431 6.2e-08 60.5 39 64.1
Duzib147G0707 Durio zibethinus HOM05D000086 ORTHO05D000431 8.1e-08 60.1 41 68.3
TWI53G0251 Tripterygium wilfordii HOM05D000086 ORTHO05D000431 8.1e-08 60.1 41 63.4
VMungo0251G2391 Vigna mungo HOM05D000086 ORTHO05D000431 8.1e-08 60.1 42 66.7
arahy.Tifrunner.gnm1.ann1.1BG2C5 Arachis hypogaea HOM05D000086 ORTHO05D000431 1.1e-07 59.7 42 61.9
arahy.Tifrunner.gnm1.ann1.WBD5UZ Arachis hypogaea HOM05D000086 ORTHO05D000183 1.1e-07 59.7 42 61.9
unitig_748.g8649 Utricularia gibba HOM05D000086 ORTHO05D000431 1.1e-07 59.7 39 56.4
MSTRG.16604 Avicennia marina HOM05D000086 ORTHO05D000431 1.4e-07 59.3 38 65.8
MSTRG.3753 Avicennia marina HOM05D000086 ORTHO05D000431 1.4e-07 59.3 60 51.7
Cfa002589 Carpinus fangiana HOM05D000086 ORTHO05D000431 1.4e-07 59.3 41 58.5
CiPaw.03G146500 Carya illinoinensis HOM05D000086 ORTHO05D000431 1.4e-07 59.3 41 63.4
RcHm_v2.0_Chr6g0291501 Rosa chinensis HOM05D000086 ORTHO05D000431 1.4e-07 59.3 39 66.7
TAR376G0764 Trochodendron aralioides HOM05D000086 ORTHO05D000431 1.4e-07 59.3 39 61.5
Atru.chr3.1337 Acer truncatum HOM05D000086 ORTHO05D000431 1.8e-07 58.9 42 61.9
Glyma.15G056000 Glycine max HOM05D000086 ORTHO05D000431 1.8e-07 58.9 37 62.2
Phvul.002G211600 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 1.8e-07 58.9 42 64.3
DCAR_021883 Daucus carota HOM05D000086 ORTHO05D000431 2.4e-07 58.5 40 60.0
FAN23G1114 Fragaria x ananassa HOM05D000086 ORTHO05D000431 2.4e-07 58.5 41 61.0
Eucgr.H04739 Eucalyptus grandis HOM05D000086 ORTHO05D000431 3.1e-07 58.2 39 61.5
FvH4_2g23890 Fragaria vesca HOM05D000086 ORTHO05D000431 3.1e-07 58.2 39 64.1
FAN15G0479 Fragaria x ananassa HOM05D000086 ORTHO05D000431 3.1e-07 58.2 39 64.1
FAN15G2540 Fragaria x ananassa HOM05D000086 ORTHO05D000431 3.1e-07 58.2 39 64.1
FAN20G1770 Fragaria x ananassa HOM05D000086 ORTHO05D000431 3.1e-07 58.2 39 64.1
FAN24G1066 Fragaria x ananassa HOM05D000086 ORTHO05D000431 3.1e-07 58.2 39 64.1
HanXRQChr17g0561031 Helianthus annuus HOM05D000086 ORTHO05D000431 3.1e-07 58.2 38 65.8
Potri.007G111900 Populus trichocarpa HOM05D000086 ORTHO05D000431 3.1e-07 58.2 40 65.0
Eucgr.G00895 Eucalyptus grandis HOM05D000086 ORTHO05D000431 4.0e-07 57.8 40 57.5
Peaxi162Scf00299g00919 Petunia axillaris HOM05D000086 ORTHO05D000431 4.0e-07 57.8 38 63.2
Potri.017G049300 Populus trichocarpa HOM05D000086 ORTHO05D000431 4.0e-07 57.8 40 60.0
Sabra05G0058300 Salix brachista HOM05D000086 ORTHO05D000431 5.2e-07 57.4 41 58.5
CsaV3_7G007060 Cucumis sativus L. HOM05D000086 ORTHO05D000431 6.8e-07 57.0 37 64.9
Peaxi162Scf00139g00031 Petunia axillaris HOM05D000086 ORTHO05D000431 6.8e-07 57.0 39 59.0
Sabra07G0080800 Salix brachista HOM05D000086 ORTHO05D000431 6.8e-07 57.0 41 53.7
Lj6g0002125 Lotus japonicus HOM05D000086 ORTHO05D000431 8.9e-07 56.6 40 52.5
Potri.002G101800 Populus trichocarpa HOM05D000086 ORTHO05D000431 8.9e-07 56.6 41 61.0
Sabra17G0036500 Salix brachista HOM05D000086 ORTHO05D000431 8.9e-07 56.6 40 57.5
Sabra17G0041600 Salix brachista HOM05D000086 ORTHO05D000431 8.9e-07 56.6 40 57.5
Sabra17G0041900 Salix brachista HOM05D000086 ORTHO05D000431 8.9e-07 56.6 40 57.5
Sed0007105 Sechium edule HOM05D000086 ORTHO05D000431 8.9e-07 56.6 38 63.2
ClCG09G015940 Citrullus lanatus HOM05D000086 ORTHO05D000431 1.2e-06 56.2 38 63.2
Eucgr.B00047 Eucalyptus grandis HOM05D000086 ORTHO05D000431 1.2e-06 56.2 39 64.1
PGR042G3767 Punica granatum HOM05D000086 ORTHO05D000431 1.2e-06 56.2 39 66.7
QL02p002217 Quercus lobata HOM05D000086 ORTHO05D000431 1.2e-06 56.2 41 63.4
Sabra07G0091700 Salix brachista HOM05D000086 ORTHO05D000431 1.2e-06 56.2 38 63.2
Sc16g0000330 Simmondsia chinensis HOM05D000086 ORTHO05D000431 1.2e-06 56.2 40 62.5
MSTRG.20286 Avicennia marina HOM05D000086 ORTHO05D000431 1.5e-06 55.8 37 62.2
Ciclev10001098m.g Citrus clementina HOM05D000086 ORTHO05D000431 1.5e-06 55.8 39 66.7
Gohir.A05G222900 Gossypium hirsutum HOM05D000086 ORTHO05D000431 1.5e-06 55.8 39 64.1
Gohir.D05G225600 Gossypium hirsutum HOM05D000086 ORTHO05D000431 1.5e-06 55.8 39 64.1
Gorai.009G233100 Gossypium raimondii HOM05D000086 ORTHO05D000431 1.5e-06 55.8 39 64.1
THA.LOC104804413 Tarenaya hassleriana HOM05D000086 ORTHO05D000431 1.5e-06 55.8 41 58.5
COL.COLO4_11991 Corchorus olitorius HOM05D000086 ORTHO05D000431 2.0e-06 55.5 39 64.1
MELO3C018588.2 Cucumis melo HOM05D000086 ORTHO05D000431 2.0e-06 55.5 37 62.2
Duzib093G1162 Durio zibethinus HOM05D000086 ORTHO05D000431 2.0e-06 55.5 39 64.1
Glyma.13G042300 Glycine max HOM05D000086 ORTHO05D000431 2.0e-06 55.5 45 55.6
Potri.005G071300 Populus trichocarpa HOM05D000086 ORTHO05D000431 2.0e-06 55.5 41 61.0
Thecc.08G100700 Theobroma cacao HOM05D000086 ORTHO05D000431 2.0e-06 55.5 39 64.1
Cfa017903 Carpinus fangiana HOM05D000086 ORTHO05D000431 2.6e-06 55.1 52 51.9
Phvul.006G203900 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 2.6e-06 55.1 38 55.3
Potri.007G097500 Populus trichocarpa HOM05D000086 ORTHO05D000431 2.6e-06 55.1 41 56.1
DCAR_003459 Daucus carota HOM05D001694 ORTHO05D000248 3.4e-06 54.7 41 58.5
ClCG01G018570 Citrullus lanatus HOM05D000086 ORTHO05D000431 4.4e-06 54.3 35 62.9
Duzib041G0657 Durio zibethinus HOM05D000086 ORTHO05D000431 4.4e-06 54.3 39 61.5
PGR031G1317 Punica granatum HOM05D000086 ORTHO05D000431 4.4e-06 54.3 39 59.0
Cpa.g.sc42.20 Carica papaya HOM05D000086 ORTHO05D000431 5.8e-06 53.9 39 61.5
Sabra02G0079800 Salix brachista HOM05D000086 ORTHO05D000431 5.8e-06 53.9 39 59.0
CSS0016182 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000431 7.6e-06 53.5 40 52.5
unitig_21.g20696 Utricularia gibba HOM05D002438 ORTHO05D002617 9.9e-06 53.1 39 56.4
unitig_744.g24185 Utricularia gibba HOM05D000086 ORTHO05D000431 9.9e-06 53.1 39 53.8


User provided reference genes

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