Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16844 Davidia involucrata HOM05D002636 ORTHO05D182096 3.9e-78 294.7 141 100.0
Dinv28587 Davidia involucrata HOM05D311511 ORTHO05D182959 3.8e-17 92.0 104 48.1
Dinv17971 Davidia involucrata HOM05D002636 ORTHO05D003490 2.6e-13 79.3 62 62.9
Dinv28585 Davidia involucrata HOM05D002636 ORTHO05D003490 1.7e-12 76.6 103 44.7
Hma1.2p1_0714F.1_g207960 Hydrangea macrophylla HOM05D002636 ORTHO05D003490 5.9e-10 68.2 96 45.8
Dinv29165 Davidia involucrata HOM05D002636 ORTHO05D003490 2.2e-09 66.2 97 41.2
Eucgr.C03862 Eucalyptus grandis HOM05D000528 ORTHO05D001569 5.0e-09 65.1 34 88.2
Hma1.2p1_0758F.1_g213625 Hydrangea macrophylla HOM05D002636 ORTHO05D003490 5.0e-09 65.1 108 40.7
CSS0028217 Camellia sinensis var. sinensis HOM05D002636 ORTHO05D003490 6.5e-09 64.7 108 40.7
QL03p049169 Quercus lobata HOM05D000528 ORTHO05D001569 6.5e-09 64.7 55 60.0
Sed0013375 Sechium edule HOM05D002636 ORTHO05D003490 6.5e-09 64.7 108 38.9
Duzib150G0943 Durio zibethinus HOM05D000528 ORTHO05D001569 8.5e-09 64.3 34 85.3
CSS0010183 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D001569 1.1e-08 63.9 30 96.7
CSS0031605 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D001569 1.1e-08 63.9 30 96.7
COL.COLO4_33169 Corchorus olitorius HOM05D002636 ORTHO05D003490 1.1e-08 63.9 108 38.0
Dinv41589 Davidia involucrata HOM05D000528 ORTHO05D001569 1.1e-08 63.9 30 96.7
Gohir.A02G139900 Gossypium hirsutum HOM05D002636 ORTHO05D003490 1.1e-08 63.9 108 38.0
Rhsim03G0244100 Rhododendron simsii HOM05D000528 ORTHO05D001569 1.5e-08 63.5 34 82.4
RcHm_v2.0_Chr2g0090781 Rosa chinensis HOM05D000528 ORTHO05D001569 1.5e-08 63.5 30 93.3
TWI34G1986 Tripterygium wilfordii HOM05D000528 ORTHO05D001569 1.5e-08 63.5 34 85.3
Atru.chr12.1982 Acer truncatum HOM05D002636 ORTHO05D003490 1.9e-08 63.2 108 38.0
Ciclev10010624m.g Citrus clementina HOM05D000528 ORTHO05D001569 1.9e-08 63.2 30 93.3
Gohir.D03G050300 Gossypium hirsutum HOM05D002636 ORTHO05D003490 1.9e-08 63.2 108 38.0
Gorai.003G051900 Gossypium raimondii HOM05D002636 ORTHO05D003490 1.9e-08 63.2 108 38.0
Sc13g0010830 Simmondsia chinensis HOM05D002636 ORTHO05D003490 1.9e-08 63.2 108 38.0
Cpa.g.sc23.116 Carica papaya HOM05D000528 ORTHO05D001569 2.5e-08 62.8 30 93.3
Eucgr.A02966 Eucalyptus grandis HOM05D002636 ORTHO05D003490 2.5e-08 62.8 99 41.4
MD02G1050300 Malus domestica HOM05D000528 ORTHO05D001569 2.5e-08 62.8 30 93.3
TAR362G0147 Trochodendron aralioides HOM05D000528 ORTHO05D001569 2.5e-08 62.8 30 93.3
vmacro06203 Vaccinium macrocarpon HOM05D000528 ORTHO05D001569 2.5e-08 62.8 30 93.3
CANSAT21G0716 Cannabis sativa HOM05D000528 ORTHO05D000001 3.2e-08 62.4 30 93.3
Cfa015878 Carpinus fangiana HOM05D002636 ORTHO05D003490 3.2e-08 62.4 108 38.9
Gohir.D08G243000 Gossypium hirsutum HOM05D002636 ORTHO05D003490 3.2e-08 62.4 108 37.0
Gorai.004G258900 Gossypium raimondii HOM05D002636 ORTHO05D003490 3.2e-08 62.4 108 37.0
Manes.09G124600 Manihot esculenta HOM05D002636 ORTHO05D003490 3.2e-08 62.4 67 49.3
Nitab4.5_0000011g0390 Nicotiana tabacum HOM05D002636 ORTHO05D003490 3.2e-08 62.4 107 39.3
Nitab4.5_0000921g0040 Nicotiana tabacum HOM05D002636 ORTHO05D003490 3.2e-08 62.4 107 39.3
Sc19g0000200 Simmondsia chinensis HOM05D002636 ORTHO05D003490 3.2e-08 62.4 67 49.3
Atru.BG.16.p Acer truncatum HOM05D000528 ORTHO05D001569 4.2e-08 62.0 30 90.0
CiPaw.03G233900 Carya illinoinensis HOM05D000528 ORTHO05D001569 4.2e-08 62.0 30 90.0
Psat2g188160 Pisum sativum HOM05D002636 ORTHO05D003490 4.2e-08 62.0 56 51.8
Thecc.09G112700 Theobroma cacao HOM05D000528 ORTHO05D001569 4.2e-08 62.0 34 82.4
VMungo0464G1860 Vigna mungo HOM05D000528 ORTHO05D001569 4.2e-08 62.0 96 42.7
Actinidia32687 Actinidia chinensis HOM05D000528 ORTHO05D001569 5.5e-08 61.6 30 86.7
Aqoxy7G03760 Aquilegia oxysepala HOM05D000528 ORTHO05D001569 5.5e-08 61.6 35 77.1
FvH4_1g05140 Fragaria vesca HOM05D000528 ORTHO05D001569 5.5e-08 61.6 30 90.0
FAN19G0743 Fragaria x ananassa HOM05D000528 ORTHO05D001569 5.5e-08 61.6 30 90.0
FAN26G0098 Fragaria x ananassa HOM05D000528 ORTHO05D001569 5.5e-08 61.6 30 90.0
FAN26G2632 Fragaria x ananassa HOM05D000528 ORTHO05D001569 5.5e-08 61.6 30 90.0
Gohir.A08G222700 Gossypium hirsutum HOM05D002636 ORTHO05D003490 5.5e-08 61.6 108 37.0
Nn3g19318 Nelumbo nucifera HOM05D002636 ORTHO05D003490 5.5e-08 61.6 56 53.6
Sed0009712 Sechium edule HOM05D002636 ORTHO05D003490 5.5e-08 61.6 108 38.0
Aqoxy5G01765 Aquilegia oxysepala HOM05D000528 ORTHO05D001569 7.2e-08 61.2 35 77.1
Gohir.D05G023800 Gossypium hirsutum HOM05D000528 ORTHO05D001569 7.2e-08 61.2 34 79.4
Gorai.009G023900 Gossypium raimondii HOM05D000528 ORTHO05D001569 7.2e-08 61.2 34 79.4
PSO017G0622 Papaver somniferum HOM05D000528 ORTHO05D001569 7.2e-08 61.2 35 74.3
PSO675G2635 Papaver somniferum HOM05D000528 ORTHO05D001569 7.2e-08 61.2 35 74.3
EL10Ac8g18513 Beta vulgaris HOM05D000528 ORTHO05D001569 9.4e-08 60.8 30 90.0
CsaV3_2G002330 Cucumis sativus L. HOM05D000528 ORTHO05D001569 9.4e-08 60.8 61 54.1
DCAR_028721 Daucus carota HOM05D000528 ORTHO05D001569 9.4e-08 60.8 34 82.4
Dinv17263 Davidia involucrata HOM05D002636 ORTHO05D003490 9.4e-08 60.8 97 39.2
Duzib168G2182 Durio zibethinus HOM05D000528 ORTHO05D001569 9.4e-08 60.8 34 79.4
Cfa003276 Carpinus fangiana HOM05D000528 ORTHO05D001569 1.2e-07 60.5 30 80.0
Ca_24448_v3 Cicer arietinum L. HOM05D002636 ORTHO05D003490 1.2e-07 60.5 58 50.0
Haze_25700 Corylus avellana HOM05D000528 ORTHO05D001569 1.2e-07 60.5 30 80.0
Gohir.D08G242900 Gossypium hirsutum HOM05D002636 ORTHO05D003490 1.2e-07 60.5 108 38.0
Gorai.004G258800 Gossypium raimondii HOM05D002636 ORTHO05D003490 1.2e-07 60.5 108 38.0
Lalb_Chr09g0320281 Lupinus albus HOM05D002636 ORTHO05D003490 1.2e-07 60.5 68 45.6
Lalb_Chr16g0376601 Lupinus albus HOM05D002636 ORTHO05D003490 1.2e-07 60.5 67 47.8
Medtr5g007790 Medicago truncatula HOM05D002636 ORTHO05D003490 1.2e-07 60.5 56 50.0
Hund09781 Selenicereus undatus HOM05D002636 ORTHO05D003490 1.2e-07 60.5 108 37.0
AUR62005903 Chenopodium quinoa HOM05D002636 ORTHO05D003490 1.6e-07 60.1 108 38.0
AUR62028167 Chenopodium quinoa HOM05D002636 ORTHO05D003490 1.6e-07 60.1 108 38.0
Gohir.A08G222600 Gossypium hirsutum HOM05D002636 ORTHO05D003490 1.6e-07 60.1 108 38.0
Lsat_1_v5_gn_9_47401 Lactuca sativa HOM05D002636 ORTHO05D003490 1.6e-07 60.1 99 42.4
Sabra18G0066200 Salix brachista HOM05D000528 ORTHO05D001569 1.6e-07 60.1 30 83.3
Thecc.05G212000 Theobroma cacao HOM05D002636 ORTHO05D003490 1.6e-07 60.1 56 51.8
ClCG11G002530 Citrullus lanatus HOM05D000528 ORTHO05D001569 2.1e-07 59.7 30 86.7
COL.COLO4_34896 Corchorus olitorius HOM05D000528 ORTHO05D001569 2.1e-07 59.7 34 76.5
Phvul.002G038500 Phaseolus vulgaris HOM05D002636 ORTHO05D003490 2.1e-07 59.7 53 54.7
VMungo1215G1440 Vigna mungo HOM05D002636 ORTHO05D003490 2.1e-07 59.7 53 54.7
GSVIVG01015408001 Vitis vinifera HOM05D000528 ORTHO05D001569 2.1e-07 59.7 30 86.7
Cc06_g09520 Coffea canephora HOM05D000528 ORTHO05D001569 2.7e-07 59.3 51 54.9
Duzib177G0222 Durio zibethinus HOM05D002636 ORTHO05D003490 2.7e-07 59.3 108 36.1
Manes.03G019000 Manihot esculenta HOM05D000528 ORTHO05D001569 2.7e-07 59.3 30 86.7
Sc18g0001130 Simmondsia chinensis HOM05D000528 ORTHO05D001569 2.7e-07 59.3 30 86.7
GSVIVG01024418001 Vitis vinifera HOM05D002636 ORTHO05D003490 2.7e-07 59.3 67 49.3
EL10Ac3g05088 Beta vulgaris HOM05D002636 ORTHO05D003490 3.6e-07 58.9 98 42.9
CAN.G303.76 Capsicum annuum HOM05D002636 ORTHO05D003490 3.6e-07 58.9 96 39.6
Ca_25521_v3 Cicer arietinum L. HOM05D000528 ORTHO05D001569 3.6e-07 58.9 34 79.4
Duzib128G0913 Durio zibethinus HOM05D002636 ORTHO05D003490 3.6e-07 58.9 67 47.8
Glyma.01G228900 Glycine max HOM05D002636 ORTHO05D003490 3.6e-07 58.9 66 47.0
HanXRQChr04g0105261 Helianthus annuus HOM05D002636 ORTHO05D003490 3.6e-07 58.9 108 37.0
Lj7A647T56 Lonicera japonica HOM05D000528 ORTHO05D001569 3.6e-07 58.9 30 86.7
Lj3g0010641 Lotus japonicus HOM05D002636 ORTHO05D003490 3.6e-07 58.9 56 50.0
MBI01_g11792_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D001569 3.6e-07 58.9 36 72.2
Medtr8g013700 Medicago truncatula HOM05D002636 ORTHO05D003490 3.6e-07 58.9 45 62.2
Nitab4.5_0005081g0030 Nicotiana tabacum HOM05D002636 ORTHO05D003490 3.6e-07 58.9 108 37.0
Oeu035123.1 Olea europaea HOM05D002636 ORTHO05D003490 3.6e-07 58.9 67 47.8
Prupe.2G324800 Prunus persica HOM05D002636 ORTHO05D003490 3.6e-07 58.9 110 40.0
TAR375G0953 Trochodendron aralioides HOM05D002636 ORTHO05D003490 3.6e-07 58.9 67 49.3
Actinidia34303 Actinidia chinensis HOM05D002636 ORTHO05D003490 4.7e-07 58.5 67 47.8
ClCG10G009080 Citrullus lanatus HOM05D002636 ORTHO05D003490 4.7e-07 58.5 108 36.1
MELO3C019034.2 Cucumis melo HOM05D002636 ORTHO05D003490 4.7e-07 58.5 108 36.1
CsaV3_4G009280 Cucumis sativus L. HOM05D002636 ORTHO05D003490 4.7e-07 58.5 108 36.1
Glyma.11G011700 Glycine max HOM05D002636 ORTHO05D003490 4.7e-07 58.5 66 47.0
Manes.08G163100 Manihot esculenta HOM05D002636 ORTHO05D003490 4.7e-07 58.5 108 38.0
Peaxi162Scf00133g00091 Petunia axillaris HOM05D002636 ORTHO05D003490 4.7e-07 58.5 45 64.4
Potri.018G075300 Populus trichocarpa HOM05D000528 ORTHO05D001569 4.7e-07 58.5 30 90.0
Lj2g0020151 Lotus japonicus HOM05D000528 ORTHO05D001569 6.1e-07 58.2 30 90.0
Lalb_Chr05g0211291 Lupinus albus HOM05D002636 ORTHO05D003490 6.1e-07 58.2 55 54.5
Lalb_Chr14g0371441 Lupinus albus HOM05D000528 ORTHO05D001569 6.1e-07 58.2 30 90.0
Peaxi162Scf00745g00846 Petunia axillaris HOM05D002636 ORTHO05D003490 6.1e-07 58.2 114 36.0
Phvul.004G161900 Phaseolus vulgaris HOM05D000528 ORTHO05D001569 6.1e-07 58.2 47 61.7
Psat1g040480 Pisum sativum HOM05D000528 ORTHO05D001569 6.1e-07 58.2 30 90.0
Prupe.7G228800 Prunus persica HOM05D000528 ORTHO05D001569 6.1e-07 58.2 30 90.0
TPR.G30576 Trifolium pratense HOM05D000528 ORTHO05D001569 6.1e-07 58.2 30 90.0
TWI60G0320 Tripterygium wilfordii HOM05D002636 ORTHO05D003490 6.1e-07 58.2 108 37.0
HanXRQChr12g0355451 Helianthus annuus HOM05D000528 ORTHO05D001569 8.0e-07 57.8 29 89.7
Lsat_1_v5_gn_8_3740 Lactuca sativa HOM05D002636 ORTHO05D003490 8.0e-07 57.8 74 43.2
Lj3C888T5 Lonicera japonica HOM05D002636 ORTHO05D003490 8.0e-07 57.8 57 54.4
MBI18_g47637_MAGBIO Magnolia biondii HOM05D002636 ORTHO05D003490 8.0e-07 57.8 35 71.4
Sed0002065 Sechium edule HOM05D000528 ORTHO05D001569 8.0e-07 57.8 31 80.6
CiPaw.06G019200 Carya illinoinensis HOM05D002636 ORTHO05D003490 1.0e-06 57.4 108 38.0
MELO3C004551.2 Cucumis melo HOM05D000528 ORTHO05D001569 1.0e-06 57.4 30 83.3
MBI02_g22109_MAGBIO Magnolia biondii HOM05D002636 ORTHO05D003490 1.0e-06 57.4 44 63.6
TPR.G37981 Trifolium pratense HOM05D002636 ORTHO05D003490 1.4e-06 57.0 56 48.2
ATR0752G129 Amborella trichopoda HOM05D002636 ORTHO05D003490 1.8e-06 56.6 67 46.3
CiPaw.05G238800 Carya illinoinensis HOM05D002636 ORTHO05D003490 1.8e-06 56.6 67 47.8
Nitab4.5_0000021g0460 Nicotiana tabacum HOM05D002636 ORTHO05D003490 1.8e-06 56.6 55 56.4
THA.LOC104802918 Tarenaya hassleriana HOM05D002636 ORTHO05D003490 1.8e-06 56.6 108 37.0
TWI34G1095 Tripterygium wilfordii HOM05D002636 ORTHO05D003490 1.8e-06 56.6 67 46.3
Actinidia08741 Actinidia chinensis HOM05D002636 ORTHO05D003490 2.3e-06 56.2 66 48.5
Aa31LG11G12580 Aethionema arabicum HOM05D002636 ORTHO05D003490 2.3e-06 56.2 110 38.2
CSS0010103 Camellia sinensis var. sinensis HOM05D002636 ORTHO05D003490 2.3e-06 56.2 111 39.6
MD01G1234500 Malus domestica HOM05D002636 ORTHO05D003490 2.3e-06 56.2 111 39.6
HPP92_002719 Vanilla planifolia HOM05D000528 ORTHO05D001569 2.3e-06 56.2 32 78.1
arahy.Tifrunner.gnm1.ann1.35ZMHK Arachis hypogaea HOM05D000528 ORTHO05D001569 3.0e-06 55.8 30 86.7
arahy.Tifrunner.gnm1.ann1.CV2QSX Arachis hypogaea HOM05D000528 ORTHO05D001569 3.0e-06 55.8 30 86.7
Cpa.g.sc39.74 Carica papaya HOM05D002636 ORTHO05D003490 3.0e-06 55.8 73 45.2
HanXRQChr03g0088411 Helianthus annuus HOM05D002636 ORTHO05D003490 3.0e-06 55.8 108 35.2
Medtr4g077660 Medicago truncatula HOM05D002636 ORTHO05D003490 3.0e-06 55.8 56 48.2
Medtr6g086260 Medicago truncatula HOM05D000528 ORTHO05D001569 3.0e-06 55.8 34 73.5
Nn1g00121 Nelumbo nucifera HOM05D000528 ORTHO05D001569 3.0e-06 55.8 36 61.1
Nn1g01959 Nelumbo nucifera HOM05D002636 ORTHO05D003490 3.0e-06 55.8 67 47.8
Oeu061068.1 Olea europaea HOM05D002636 ORTHO05D003490 3.0e-06 55.8 55 54.5
A10p22300 Brassica napus HOM05D002636 ORTHO05D003490 4.0e-06 55.5 67 44.8
C09p60130 Brassica napus HOM05D002636 ORTHO05D003490 4.0e-06 55.5 67 44.8
BolC9t58847H Brassica oleracea HOM05D002636 ORTHO05D003490 4.0e-06 55.5 67 44.8
BraA10t44289Z Brassica rapa HOM05D002636 ORTHO05D003490 4.0e-06 55.5 67 44.8
Nitab4.5_0000413g0170 Nicotiana tabacum HOM05D000528 ORTHO05D001569 4.0e-06 55.5 29 79.3
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 4.0e-06 55.5 55 56.4
Solyc03g096920.3 Solanum lycopersicum HOM05D002636 ORTHO05D003490 4.0e-06 55.5 108 35.2
Sopen03g027670 Solanum pennellii HOM05D002636 ORTHO05D003490 4.0e-06 55.5 108 35.2
TWI32G0353 Tripterygium wilfordii HOM05D002636 ORTHO05D003490 4.0e-06 55.5 108 36.1
Zm00001eb138130 Zea mays HOM05D000528 ORTHO05D001569 4.0e-06 55.5 30 83.3
Aqoxy3G02006 Aquilegia oxysepala HOM05D002636 ORTHO05D003490 5.2e-06 55.1 56 50.0
Aqoxy4G00755 Aquilegia oxysepala HOM05D002636 ORTHO05D003490 5.2e-06 55.1 56 50.0
Cc02_g00350 Coffea canephora HOM05D002636 ORTHO05D003490 5.2e-06 55.1 98 40.8
ECA232G3006 Erigeron canadensis HOM05D002636 ORTHO05D003490 5.2e-06 55.1 56 48.2
MD07G1307000 Malus domestica HOM05D002636 ORTHO05D003490 5.2e-06 55.1 55 56.4
SalBow7G0484 Salvia bowleyana HOM05D000528 ORTHO05D001569 5.2e-06 55.1 69 46.4
FAN01G0767 Fragaria x ananassa HOM05D002636 ORTHO05D003490 6.7e-06 54.7 67 47.8
Sabra19G0056700 Salix brachista HOM05D002636 ORTHO05D003490 6.7e-06 54.7 108 36.1
Ah.04g156830 Amaranthus hybridus HOM05D002636 ORTHO05D003490 8.8e-06 54.3 108 35.2
A02p03920 Brassica napus HOM05D002636 ORTHO05D003490 8.8e-06 54.3 67 43.3
BraA02t05355Z Brassica rapa HOM05D002636 ORTHO05D003490 8.8e-06 54.3 67 43.3
ECA233G0696 Erigeron canadensis HOM05D002636 ORTHO05D003490 8.8e-06 54.3 108 35.2
ECA234G4174 Erigeron canadensis HOM05D000528 ORTHO05D001569 8.8e-06 54.3 29 82.8
FvH4_7g33850 Fragaria vesca HOM05D002636 ORTHO05D003490 8.8e-06 54.3 67 47.8
FAN03G1954 Fragaria x ananassa HOM05D002636 ORTHO05D003490 8.8e-06 54.3 67 47.8
FAN10G2428 Fragaria x ananassa HOM05D002636 ORTHO05D003490 8.8e-06 54.3 67 47.8
Glyma.12G018500 Glycine max HOM05D002636 ORTHO05D003490 8.8e-06 54.3 56 48.2
LjContig00222g0023231 Lotus japonicus HOM05D002636 ORTHO05D003490 8.8e-06 54.3 56 50.0
MD15G1187900 Malus domestica HOM05D000528 ORTHO05D048625 8.8e-06 54.3 28 85.7
PGR102G3236 Punica granatum HOM05D000528 ORTHO05D001569 8.8e-06 54.3 34 67.6
Sabra13G0069300 Salix brachista HOM05D002636 ORTHO05D003490 8.8e-06 54.3 55 54.5


User provided reference genes

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