Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 0.0e+00 1212.6 633 100.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.7e-245 852.8 600 73.5
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 7.0e-244 847.4 600 73.2
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 4.7e-240 834.7 600 73.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 3.7e-237 825.1 602 73.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 4.0e-231 805.1 600 71.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.4e-214 748.4 683 61.1
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.3e-207 726.1 601 64.9
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.2e-206 723.8 602 63.6
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.1e-201 707.2 604 63.1
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.6e-200 703.4 564 65.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 9.2e-196 687.6 600 61.2
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.3e-194 682.9 600 60.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 3.6e-192 675.6 602 60.3
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 8.1e-192 674.5 604 60.3
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.5e-190 670.2 590 60.2
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.4e-189 664.8 600 59.7
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 7.1e-188 661.4 617 58.7
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.3e-186 657.1 602 60.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.2e-184 650.6 582 60.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.6e-184 649.0 583 60.4
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.7e-184 648.7 582 59.8
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.4e-183 646.4 582 59.5
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 8.9e-183 644.4 606 57.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.9e-181 639.4 582 59.5
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.2e-180 636.0 607 58.0
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 2.3e-178 629.8 600 58.7
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 6.6e-178 628.2 603 56.6
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.3e-176 624.0 607 56.3
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.6e-176 623.6 609 57.0
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 4.8e-176 622.1 600 56.3
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.9e-175 618.2 601 57.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.6e-174 616.3 600 57.2
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 4.4e-174 615.5 600 56.2
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 7.6e-174 614.8 602 54.3
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 9.9e-174 614.4 600 55.8
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.3e-173 614.0 600 55.5
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.2e-173 613.2 582 55.7
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.9e-173 612.8 564 58.0
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 8.4e-173 611.3 600 56.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.2e-172 609.4 600 56.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 7.1e-172 608.2 602 56.3
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.3e-172 607.8 601 54.7
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.2e-171 607.4 602 55.8
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.2e-171 607.4 601 55.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.1e-171 606.7 602 55.3
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.7e-171 606.3 582 56.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 3.5e-171 605.9 604 55.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.3e-170 604.0 600 56.0
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.3e-170 604.0 602 57.1
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.7e-170 603.6 601 57.2
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-170 603.2 601 54.6
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 3.0e-170 602.8 600 55.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.9e-169 600.1 602 55.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.5e-169 599.7 592 55.2
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 3.3e-169 599.4 582 54.3
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.3e-169 599.4 604 54.0
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 5.6e-169 598.6 477 67.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.6e-169 597.8 601 54.4
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.8e-168 596.3 566 58.5
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.6e-168 595.9 600 54.8
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 8.1e-168 594.7 564 56.2
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.5e-166 590.5 595 54.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 7.6e-166 588.2 600 52.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.3e-165 587.4 600 56.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.2e-165 586.6 559 58.1
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.4e-164 583.9 599 54.1
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 2.4e-164 583.2 603 54.9
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 3.2e-164 582.8 600 54.0
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 7.1e-164 581.6 600 55.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 7.9e-163 578.2 559 57.2
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.1e-161 574.3 605 53.6
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 5.3e-159 565.5 508 59.6
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.5e-158 563.9 607 52.2
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.5e-158 563.9 555 56.8
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 4.5e-158 562.4 603 53.6
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.0e-157 561.2 529 59.0
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.2e-157 560.1 607 52.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.9e-157 558.9 566 54.4
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 5.5e-156 555.4 599 51.1
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 3.5e-155 552.7 592 54.2
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 5.1e-154 548.9 602 50.7
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.3e-152 544.3 605 51.9
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.9e-148 530.4 600 49.0
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.5e-148 528.9 538 52.6
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 4.3e-145 519.2 600 47.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 4.3e-145 519.2 622 47.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.0e-141 508.1 548 51.3
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.7e-141 507.3 605 48.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 2.5e-140 503.4 570 50.9
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.0e-138 498.0 528 52.8
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 3.0e-138 496.5 569 50.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 8.8e-138 495.0 563 48.7
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.3e-137 493.0 534 51.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 5.7e-137 492.3 638 46.4
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 3.1e-135 486.5 570 49.5
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 5.3e-135 485.7 568 50.4
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 9.1e-135 485.0 569 49.0
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.2e-134 484.6 608 47.4
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 7.7e-134 481.9 608 47.4
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 5.0e-133 479.2 548 49.6
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.4e-132 477.6 579 48.2
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.2e-132 476.5 618 46.4
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-131 474.6 572 47.6
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-131 474.2 573 48.0
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.7e-131 473.4 605 47.1
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.0e-130 469.9 504 53.2
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.9e-130 469.5 657 45.5
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 8.5e-125 451.8 574 46.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 6.1e-123 445.7 475 50.1
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.4e-119 433.7 523 48.9
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.0e-114 418.3 646 40.2
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 9.8e-113 411.8 530 45.1
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.2e-109 400.6 563 44.2
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 7.2e-108 395.6 419 57.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.5e-100 370.5 337 55.8
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 9.5e-100 368.6 713 36.9
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.4e-95 354.8 550 40.4
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.8e-95 354.4 650 36.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.6e-93 345.9 514 39.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.6e-93 345.9 514 39.7
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.2e-91 341.7 580 40.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.8e-90 335.9 592 37.7
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.7e-80 303.5 510 38.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.3e-51 208.8 199 52.8
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.3e-50 203.4 222 49.1
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.8e-43 180.3 217 47.0
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.5e-38 164.1 96 77.1
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.0e-37 162.5 479 27.1
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.7e-35 154.1 191 42.9
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 8.2e-35 152.9 98 75.5
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 2.5e-31 141.4 138 51.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.2e-31 140.6 95 67.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.7e-24 118.6 143 44.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 5.5e-23 113.6 247 39.3
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.1e-15 89.4 74 54.1
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.5e-07 62.4 69 46.4
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.5e-07 62.4 69 46.4
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 2.5e-07 61.6 56 53.6
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 2.5e-07 61.6 69 46.4
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 3.2e-07 61.2 58 53.4
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 3.2e-07 61.2 69 44.9
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 4.2e-07 60.8 56 51.8
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 5.5e-07 60.5 58 51.7
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 7.2e-07 60.1 56 51.8
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 7.2e-07 60.1 58 50.0
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 7.2e-07 60.1 59 47.5
Oeu056520.3 Olea europaea HOM05D001439 ORTHO05D002726 1.2e-06 59.3 56 51.8
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 1.6e-06 58.9 58 50.0
SGA_v2.0_scaffold22G09664 Striga asiatica HOM05D001439 ORTHO05D002726 1.6e-06 58.9 56 50.0
MSTRG.7359 Avicennia marina HOM05D001439 ORTHO05D002726 2.1e-06 58.5 56 50.0
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 2.1e-06 58.5 127 35.4
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 2.7e-06 58.2 56 48.2
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 2.7e-06 58.2 56 53.6
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 3.6e-06 57.8 56 48.2
CsaV3_6G050410 Cucumis sativus L. HOM05D001439 ORTHO05D002726 3.6e-06 57.8 56 53.6
Migut.H01470 Erythranthe guttata HOM05D001439 ORTHO05D002726 3.6e-06 57.8 56 48.2
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 3.6e-06 57.8 56 48.2
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 4.7e-06 57.4 238 26.5
Solyc02g077660.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 4.7e-06 57.4 58 50.0
THA.LOC104801160 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 6.1e-06 57.0 69 43.5
Nitab4.5_0000621g0070 Nicotiana tabacum HOM05D001439 ORTHO05D002726 8.0e-06 56.6 56 51.8
Nitab4.5_0005191g0050 Nicotiana tabacum HOM05D001439 ORTHO05D002726 8.0e-06 56.6 56 51.8
Sopen02g022560 Solanum pennellii HOM05D001439 ORTHO05D002726 8.0e-06 56.6 58 50.0


User provided reference genes

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