Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 9.4e-282 973.0 540 100.0
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.2e-143 514.2 457 68.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.9e-133 480.3 313 83.4
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.9e-133 480.3 447 65.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.8e-132 476.5 328 76.2
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 3.1e-128 463.0 452 60.0
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 8.6e-126 454.9 381 67.7
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 3.6e-124 449.5 385 64.7
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.8e-123 447.2 453 63.8
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.0e-122 443.7 386 64.2
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.7e-121 439.5 385 63.4
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 8.3e-121 438.3 366 68.3
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.9e-120 437.2 455 57.4
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 9.2e-120 434.9 469 56.3
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 1.0e-118 431.4 456 57.2
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.7e-118 430.6 444 59.0
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.7e-118 430.6 452 59.1
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.1e-117 427.9 453 59.6
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 3.3e-117 426.4 395 64.3
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.6e-116 422.9 386 64.8
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.8e-115 420.6 337 68.8
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 2.3e-115 420.2 452 57.5
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.5e-114 417.5 451 57.6
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 5.8e-114 415.6 447 57.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.4e-112 409.1 454 60.6
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 9.2e-112 408.3 450 60.0
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 7.8e-111 405.2 461 55.5
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.9e-110 402.9 466 58.4
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.1e-109 401.4 456 54.8
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.1e-109 401.4 450 54.9
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 5.6e-109 399.1 389 61.7
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 8.1e-108 395.2 459 54.9
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.1e-107 394.8 436 58.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.8e-107 394.0 449 60.1
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 3.1e-107 393.3 428 57.2
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 8.9e-107 391.7 452 56.0
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.6e-106 390.2 477 52.8
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 5.8e-106 389.0 326 65.3
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 7.5e-106 388.7 463 56.4
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 7.5e-106 388.7 460 55.9
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.7e-105 387.5 447 55.5
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.7e-105 386.3 322 65.8
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 8.3e-105 385.2 452 58.6
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 7.1e-104 382.1 513 48.7
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.6e-103 380.9 347 61.4
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.7e-102 377.5 369 59.6
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 1.7e-102 377.5 357 62.2
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.1e-101 374.8 421 56.8
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.5e-101 374.4 452 55.1
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 2.5e-101 373.6 451 59.2
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 6.2e-100 369.0 461 56.6
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 4.0e-99 366.3 425 56.2
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.2e-98 364.8 452 52.7
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 3.4e-98 363.2 381 58.0
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.4e-98 362.8 499 49.1
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 5.8e-98 362.5 369 59.6
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 3.8e-97 359.8 313 63.9
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.8e-97 359.8 485 49.5
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 3.8e-97 359.8 453 54.1
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.4e-97 358.6 468 53.0
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 2.7e-95 353.6 440 51.4
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.5e-95 353.2 462 56.7
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 7.8e-95 352.1 447 55.3
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 7.8e-95 352.1 393 55.2
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 6.6e-94 349.0 399 56.6
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.5e-93 347.1 447 54.8
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-92 344.7 356 56.5
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.2e-92 344.7 610 41.1
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.8e-89 333.2 442 52.9
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 8.4e-89 332.0 389 53.0
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.9e-88 330.9 452 50.7
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 5.4e-88 329.3 456 52.4
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 9.3e-88 328.6 381 54.3
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.2e-87 328.2 330 57.6
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 6.6e-86 322.4 465 45.6
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.3e-84 318.2 388 51.8
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 3.6e-84 316.6 476 47.3
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 2.4e-83 313.9 500 46.4
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 9.0e-83 312.0 310 58.7
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.2e-81 307.4 317 54.9
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 8.4e-81 305.4 403 51.9
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 3.2e-80 303.5 360 53.6
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 4.2e-80 303.1 384 51.0
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.2e-80 303.1 384 51.0
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.6e-79 301.2 380 51.3
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 4.6e-79 299.7 403 51.4
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 6.0e-79 299.3 406 48.5
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.9e-79 298.9 317 53.9
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 1.8e-78 297.7 261 63.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.1e-77 295.0 314 53.5
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.2e-76 289.3 351 53.6
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 6.2e-76 289.3 248 64.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 8.1e-76 288.9 434 46.3
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 5.8e-74 282.7 267 60.7
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 5.8e-74 282.7 468 44.0
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.3e-73 281.6 209 73.7
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.2e-72 276.6 217 68.7
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 5.5e-72 276.2 357 53.5
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.6e-71 274.6 220 69.5
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.7e-71 273.9 300 54.7
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 3.5e-71 273.5 190 74.7
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 2.3e-70 270.8 288 56.2
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 5.1e-70 269.6 303 54.5
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 8.7e-70 268.9 303 53.8
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.3e-68 265.0 216 68.1
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 3.7e-68 263.5 278 55.8
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-65 255.0 329 51.1
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 1.7e-65 254.6 267 56.9
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.1e-64 251.9 280 55.7
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.1e-64 251.9 280 55.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.5e-64 250.8 274 54.7
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.7e-63 247.3 273 55.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 3.9e-62 243.4 296 53.0
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 5.1e-62 243.0 255 55.7
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-58 231.1 192 61.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-54 218.8 237 53.6
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 5.7e-53 213.0 312 47.1
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.2e-52 211.1 190 65.3
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.1e-51 208.8 322 43.8
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 6.9e-51 206.1 276 50.0
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.2e-49 201.1 324 44.4
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 8.5e-49 199.1 250 50.4
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.1e-45 188.7 143 76.9
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 9.7e-45 185.7 195 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.2e-44 184.5 373 39.7
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.4e-43 181.8 246 49.2
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.0e-41 175.6 132 74.2
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.3e-41 175.3 376 37.2
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.2e-41 174.5 323 39.0
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.0e-37 161.4 257 44.0
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.7e-36 158.3 350 36.3
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 6.5e-33 146.4 224 44.2
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.1e-32 145.6 161 54.0
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 4.2e-32 143.7 159 51.6
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 5.2e-30 136.7 208 44.2
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.6e-29 134.4 153 50.3
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.7e-28 131.7 265 40.4
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.1e-27 129.0 71 84.5
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.1e-27 127.5 134 55.2
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.1e-27 127.1 71 83.1
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.0e-27 126.3 70 87.1
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.7e-26 122.9 276 37.7
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.3e-25 122.1 69 79.7
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 6.5e-25 119.8 120 53.3
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.4e-24 115.9 114 55.3
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.2e-23 115.5 133 49.6
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.6e-23 115.2 249 39.0
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 4.0e-22 110.5 239 37.2
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.3e-20 103.2 250 34.8
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.3e-20 103.2 250 34.8
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.3e-20 103.2 250 34.8
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.4e-19 102.1 108 49.1
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.4e-19 100.1 265 33.2
Dinv40698 Davidia involucrata HOM05D004030 ORTHO05D185618 5.4e-19 100.1 95 84.2
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-18 97.4 90 56.7
CSS0039806 Camellia sinensis var. sinensis HOM05D043465 ORTHO05D033917 1.1e-16 92.4 150 43.3
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.1e-15 88.2 83 61.4
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.1e-15 86.7 83 56.6
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.1e-15 86.7 100 51.0
CSS0019808 Camellia sinensis var. sinensis HOM05D043465 ORTHO05D033917 1.0e-14 85.9 150 41.3
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 8.3e-12 76.3 82 52.4
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 4.1e-11 73.9 99 37.4
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.2e-11 72.8 72 54.2
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.6e-10 72.0 154 39.6
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.3e-09 68.2 174 29.9
Nn1g05398 Nelumbo nucifera HOM05D067915 ORTHO05D049297 2.9e-09 67.8 149 38.3
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 1.1e-08 65.9 147 45.6
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.1e-06 57.8 69 52.2


User provided reference genes

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