Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 3.9e-159 565.1 358 100.0
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 1.2e-86 324.3 347 57.9
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.1e-84 317.8 391 47.3
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 1.3e-82 310.8 372 49.7
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 2.8e-80 303.1 360 50.8
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 9.5e-73 278.1 369 46.9
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.4e-71 274.2 376 47.3
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 5.2e-71 272.3 356 46.3
Actinidia12426 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.5e-70 270.8 328 48.8
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 9.9e-70 268.1 315 47.9
Oeu007228.1 Olea europaea HOM05D006072 ORTHO05D007363 2.4e-68 263.5 372 43.8
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 2.7e-67 260.0 365 43.6
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 3.5e-67 259.6 430 41.9
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 1.3e-66 257.7 383 41.8
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 2.3e-66 256.9 364 44.2
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 3.9e-66 256.1 370 43.2
Oeu025733.1 Olea europaea HOM05D006072 ORTHO05D007363 3.9e-66 256.1 314 47.1
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 2.5e-65 253.4 373 42.9
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 2.5e-65 253.4 394 42.6
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 4.3e-65 252.7 385 43.1
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.2e-64 251.1 356 44.1
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 2.1e-64 250.4 398 40.5
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 3.6e-64 249.6 419 40.1
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 6.2e-64 248.8 398 40.5
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.1e-63 248.1 404 40.3
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 1.4e-63 247.7 368 42.4
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 1.4e-63 247.7 402 41.3
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 2.4e-63 246.9 406 41.9
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 1.5e-62 244.2 334 44.0
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.0e-62 243.8 377 41.1
Nitab4.5_0000876g0020 Nicotiana tabacum HOM05D006072 ORTHO05D007363 3.4e-62 243.0 402 41.0
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 4.4e-62 242.7 401 40.6
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 5.8e-62 242.3 409 39.1
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 1.3e-61 241.1 377 40.1
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.3e-61 241.1 316 44.3
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 1.3e-61 241.1 397 39.5
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 1.3e-61 241.1 332 43.4
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 1.3e-61 241.1 332 43.4
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.7e-61 240.7 291 48.5
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 2.2e-61 240.4 378 41.5
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 2.2e-61 240.4 390 41.0
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 3.8e-61 239.6 311 45.7
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 3.8e-61 239.6 394 40.6
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 3.8e-61 239.6 336 43.2
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 6.4e-61 238.8 322 44.1
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 1.1e-60 238.0 314 43.0
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.9e-60 237.3 287 49.5
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 1.9e-60 237.3 333 41.7
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 5.4e-60 235.7 405 39.3
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 5.4e-60 235.7 400 40.2
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 7.1e-60 235.3 382 40.8
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 1.2e-59 234.6 302 45.0
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 1.2e-59 234.6 323 43.7
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.2e-59 234.6 295 46.8
SalBow3G0772 Salvia bowleyana HOM05D006072 ORTHO05D007363 2.7e-59 233.4 363 41.9
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 2.3e-58 230.3 399 39.1
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 6.6e-58 228.8 325 40.9
SalBow4G0595 Salvia bowleyana HOM05D006072 ORTHO05D007363 8.7e-58 228.4 301 44.2
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 1.5e-57 227.6 383 39.2
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 3.3e-57 226.5 383 38.9
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 4.3e-57 226.1 374 39.0
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 4.3e-57 226.1 290 46.9
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 9.6e-57 224.9 306 41.5
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 1.6e-56 224.2 308 42.2
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.6e-56 224.2 241 48.5
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 1.6e-56 224.2 330 40.9
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.1e-56 223.8 226 51.8
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 6.2e-56 222.2 288 44.4
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 8.1e-56 221.9 360 40.3
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 8.1e-56 221.9 312 39.4
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 1.1e-55 221.5 378 38.1
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 1.4e-55 221.1 290 45.5
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 4.0e-55 219.5 305 42.0
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 4.0e-55 219.5 370 37.6
Peaxi162Scf00003g00149 Petunia axillaris HOM05D006072 ORTHO05D007363 7.6e-54 215.3 345 40.0
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 1.3e-53 214.5 299 44.8
Migut.D00310 Erythranthe guttata HOM05D006072 ORTHO05D007363 8.4e-53 211.8 289 46.7
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 1.9e-52 210.7 315 41.0
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 1.9e-52 210.7 312 42.6
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 1.9e-52 210.7 361 40.2
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 9.3e-52 208.4 315 40.6
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.2e-51 208.0 315 40.0
Rhsim09G0083000 Rhododendron simsii HOM05D006072 ORTHO05D007363 3.5e-51 206.5 190 58.4
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.0e-50 203.4 328 36.6
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.0e-50 203.4 367 36.5
Hma1.2p1_0281F.1_g113250 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 3.1e-47 193.4 347 47.8
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 6.9e-47 192.2 383 35.0
Ca_20317_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 5.8e-46 189.1 353 38.8
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 5.8e-46 189.1 230 49.1
AUR62017790 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.8e-45 186.4 211 46.9
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 1.1e-44 184.9 321 36.8
SGA_v2.0_scaffold138G35329 Striga asiatica HOM05D000358 ORTHO05D007363 1.6e-43 181.0 168 57.7
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.7e-37 161.0 311 33.4
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 1.2e-35 154.8 151 50.3
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 6.0e-35 152.5 320 31.9
PGR083G1472 Punica granatum HOM05D006072 ORTHO05D007363 5.6e-33 146.0 370 31.6
Os02g0491300 Oryza sativa ssp. japonica HOM05D006072 ORTHO05D007363 4.9e-29 132.9 311 35.0
ATR0598G193 Amborella trichopoda HOM05D006072 ORTHO05D007363 2.1e-27 127.5 134 48.5
arahy.Tifrunner.gnm1.ann1.78KFMW Arachis hypogaea HOM05D006072 ORTHO05D007363 3.5e-27 126.7 189 43.4
Solyc09g065320.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 3.5e-27 126.7 117 56.4
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.0e-26 125.2 347 28.8
Dinv20308 Davidia involucrata HOM05D006072 ORTHO05D007363 1.0e-26 125.2 106 63.2
unitig_0.g118 Utricularia gibba HOM05D006072 ORTHO05D007363 4.3e-25 119.8 100 57.0
Medtr0082s0140 Medicago truncatula HOM05D006072 ORTHO05D007363 4.8e-24 116.3 185 42.2
arahy.Tifrunner.gnm1.ann1.G5ZNF6 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.0e-21 108.6 119 50.4
arahy.Tifrunner.gnm1.ann1.U641A1 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.0e-21 108.6 119 50.4
arahy.Tifrunner.gnm1.ann1.W4NXZ5 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.0e-21 108.6 119 50.4
Actinidia07224 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.9e-20 104.4 97 55.7
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 6.1e-19 99.4 73 64.4
Lsat_1_v5_gn_1_2900 Lactuca sativa HOM05D006072 ORTHO05D007363 1.3e-16 91.7 107 47.7
Lsat_1_v5_gn_2_61421 Lactuca sativa HOM05D006072 ORTHO05D029972 8.2e-16 89.0 81 51.9
Dinv07189 Davidia involucrata HOM05D006072 ORTHO05D007363 1.8e-15 87.8 68 63.2
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 9.1e-15 85.5 231 29.0
Lsat_1_v5_gn_4_172441 Lactuca sativa HOM05D006072 ORTHO05D007363 3.4e-14 83.6 71 56.3
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 3.4e-14 83.6 172 30.2
Phvul.011G140200 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 2.7e-11 73.9 72 55.6
Rhsim02G0252600 Rhododendron simsii HOM05D001862 ORTHO05D002133 1.4e-10 71.6 62 56.5
Lj7P559T50 Lonicera japonica HOM05D010623 ORTHO05D012718 3.9e-10 70.1 171 29.8
Cfa002713 Carpinus fangiana HOM05D006072 ORTHO05D007363 1.5e-09 68.2 113 40.7
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 2.6e-09 67.4 148 33.8
Rhsim04G0161200 Rhododendron simsii HOM05D006072 ORTHO05D007363 2.6e-09 67.4 57 57.9
Migut.B01424 Erythranthe guttata HOM05D010623 ORTHO05D012718 2.2e-08 64.3 164 28.0
Ca_22792_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 3.7e-08 63.5 49 65.3
Rhsim06G0129600 Rhododendron simsii HOM05D000681 ORTHO05D025799 6.3e-08 62.8 103 42.7
DCAR_025007 Daucus carota HOM05D010623 ORTHO05D012718 1.1e-07 62.0 164 26.8
Rhsim07G0046900 Rhododendron simsii HOM05D010623 ORTHO05D012718 1.1e-07 62.0 232 26.7
CAN.G1918.1 Capsicum annuum HOM05D010623 ORTHO05D012718 2.4e-07 60.8 171 28.7
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 1.2e-06 58.5 127 32.3
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 1.2e-06 58.5 127 33.9
Actinidia31739 Actinidia chinensis HOM05D010623 ORTHO05D012718 2.6e-06 57.4 144 29.2
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 5.9e-06 56.2 135 35.6


User provided reference genes

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