Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 3.5e-158 562.0 378 100.0
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.8e-90 337.0 278 88.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 3.4e-89 332.8 278 88.1
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.7e-86 323.2 281 86.1
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 8.8e-85 318.2 286 84.3
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.5e-84 317.4 281 86.5
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 4.4e-84 315.8 288 83.7
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 4.4e-84 315.8 280 83.9
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.3e-83 314.3 280 84.3
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.3e-83 314.3 280 84.6
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 2.2e-83 313.5 278 84.5
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 2.8e-83 313.2 249 97.6
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 3.7e-83 312.8 286 82.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.1e-82 311.2 280 84.6
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 2.4e-82 310.1 281 83.6
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 3.1e-82 309.7 280 82.9
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 5.3e-82 308.9 278 83.1
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.2e-81 307.8 278 82.7
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 3.4e-81 306.2 278 82.4
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 3.4e-81 306.2 278 82.4
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 7.7e-81 305.1 279 82.8
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.0e-80 304.7 281 82.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.0e-80 304.7 278 81.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.3e-80 304.3 278 81.7
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.3e-80 304.3 280 82.9
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.7e-80 303.9 281 81.9
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 6.5e-80 302.0 278 81.7
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 3.2e-79 299.7 281 80.4
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.7e-75 287.3 278 82.4
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.2e-75 287.0 280 82.5
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 4.8e-75 285.8 279 81.4
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 3.1e-74 283.1 247 90.7
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 4.1e-74 282.7 278 82.4
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 7.0e-74 282.0 242 92.1
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 9.1e-74 281.6 247 90.3
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 9.1e-74 281.6 247 90.3
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.5e-73 279.3 253 90.1
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 4.5e-73 279.3 242 92.1
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 3.8e-72 276.2 248 88.7
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.8e-72 276.2 254 87.4
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 5.0e-72 275.8 257 86.8
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 5.0e-72 275.8 257 86.8
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.0e-72 275.8 253 87.4
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 5.0e-72 275.8 248 89.9
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.5e-72 275.4 254 87.0
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 6.5e-72 275.4 278 80.2
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 8.5e-72 275.0 253 87.0
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 8.5e-72 275.0 255 86.7
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.5e-71 274.2 254 87.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.5e-71 274.2 248 89.9
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.5e-71 273.5 248 89.1
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 4.2e-71 272.7 248 87.5
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 4.2e-71 272.7 242 91.7
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 5.5e-71 272.3 256 86.3
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.6e-70 270.8 253 86.6
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.1e-70 270.4 278 80.2
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.0e-69 268.1 279 78.1
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.0e-69 266.2 250 85.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.0e-68 263.8 248 86.3
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.3e-67 261.2 248 85.9
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.7e-67 260.8 141 84.4
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 2.2e-67 260.4 248 85.5
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 2.2e-67 260.4 141 83.7
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 4.8e-67 259.2 143 83.9
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 4.8e-67 259.2 141 84.4
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 6.3e-67 258.8 141 83.0
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 8.2e-67 258.5 248 86.3
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.1e-66 258.1 143 84.6
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.4e-66 257.7 141 83.7
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.4e-66 257.7 141 83.7
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.8e-66 257.3 248 85.1
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 3.1e-66 256.5 142 82.4
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 5.3e-66 255.8 279 76.0
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 5.3e-66 255.8 143 84.6
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 7.0e-66 255.4 248 83.9
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.2e-65 254.6 250 83.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.6e-65 254.2 278 78.1
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.0e-64 251.5 251 82.1
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.0e-64 251.5 251 82.1
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.0e-64 251.5 251 82.1
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.0e-64 251.5 251 82.1
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.0e-64 251.5 251 82.1
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.9e-64 250.0 248 83.1
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 3.8e-64 249.6 248 83.1
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.5e-64 248.8 141 80.1
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.9e-63 247.3 143 80.4
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 2.5e-63 246.9 142 78.9
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.5e-63 245.7 141 78.7
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 7.2e-63 245.4 141 82.3
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.6e-62 244.2 142 77.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.7e-62 243.4 146 79.5
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 3.0e-61 240.0 142 77.5
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 5.2e-61 239.2 141 76.6
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 5.2e-61 239.2 142 76.1
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.0e-60 237.3 142 76.1
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 3.4e-60 236.5 142 76.1
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 7.5e-60 235.3 142 75.4
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 7.5e-60 235.3 142 75.4
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 7.5e-60 235.3 142 75.4
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 7.5e-60 235.3 142 73.9
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 7.5e-60 235.3 142 75.4
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.7e-59 234.2 142 74.6
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 4.8e-59 232.6 142 73.2
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.4e-58 231.1 142 73.9
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 3.1e-58 229.9 142 73.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 6.5e-56 222.2 239 79.1
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 4.0e-53 213.0 278 72.7
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.1e-50 203.4 141 65.2
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 3.5e-49 199.9 279 67.4
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 6.6e-48 195.7 141 61.7
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.6e-46 191.0 277 63.2
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.1e-46 190.7 141 62.4
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 2.1e-46 190.7 144 61.8
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.8e-45 187.6 115 73.9
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 7.5e-44 182.2 104 80.8
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 1.3e-43 181.4 137 57.7
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 2.9e-43 180.3 142 61.3
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 6.6e-40 169.1 141 57.4
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.5e-39 167.9 266 55.3
Dinv07751 Davidia involucrata HOM05D000380 ORTHO05D006253 4.0e-37 159.8 101 88.1
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.3e-32 144.8 112 64.3
Dinv30185 Davidia involucrata HOM05D005280 ORTHO05D006253 2.5e-31 140.6 103 77.7
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 4.3e-31 139.8 129 51.9
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.6e-31 139.4 282 40.8
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 5.2e-29 132.9 109 56.0
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.0e-24 118.6 169 75.1
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.3e-23 112.5 272 29.8
Dinv07636 Davidia involucrata HOM05D005280 ORTHO05D006253 2.4e-21 107.5 78 79.5
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 7.6e-20 102.4 57 78.9
Dinv17937 Davidia involucrata HOM05D005280 ORTHO05D006253 3.8e-19 100.1 83 73.5
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.1e-18 95.9 272 27.6
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.3e-16 90.9 132 47.7
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.4e-12 77.0 57 57.9
Dinv09152 Davidia involucrata HOM05D066860 ORTHO05D184469 2.9e-11 73.9 112 43.8
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.8e-11 73.6 111 41.4
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.2e-09 68.6 35 85.7
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 7.8e-09 65.9 136 77.2


User provided reference genes

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