Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16712 Davidia involucrata HOM05D006703 ORTHO05D008389 1.5e-42 175.6 82 100.0
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 9.3e-24 113.2 65 84.6
Actinidia37767 Actinidia chinensis HOM05D006703 ORTHO05D008389 1.5e-21 105.9 68 73.5
vmacro07494 Vaccinium macrocarpon HOM05D006703 ORTHO05D008389 2.8e-20 101.7 68 72.1
Actinidia03862 Actinidia chinensis HOM05D006703 ORTHO05D008389 3.7e-20 101.3 69 69.6
Hma1.2p1_0401F.1_g144790 Hydrangea macrophylla HOM05D006703 ORTHO05D008389 1.1e-19 99.8 68 73.5
Lj1A1058G53 Lonicera japonica HOM05D006703 ORTHO05D008389 3.4e-18 94.7 68 70.6
GSVIVG01022605001 Vitis vinifera HOM05D006703 ORTHO05D008389 3.4e-18 94.7 73 67.1
Rhsim03G0062400 Rhododendron simsii HOM05D006703 ORTHO05D008389 5.8e-18 94.0 69 65.2
Nn2g14390 Nelumbo nucifera HOM05D006703 ORTHO05D008389 8.4e-17 90.1 67 68.7
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 1.2e-15 86.3 65 66.2
Nitab4.5_0000721g0180 Nicotiana tabacum HOM05D006703 ORTHO05D008389 2.1e-15 85.5 67 62.7
CiPaw.09G023100 Carya illinoinensis HOM05D006703 ORTHO05D008389 2.7e-15 85.1 67 56.7
Nitab4.5_0001918g0020 Nicotiana tabacum HOM05D006703 ORTHO05D008389 6.0e-15 84.0 67 61.2
CiPaw.10G019700 Carya illinoinensis HOM05D006703 ORTHO05D008389 7.9e-15 83.6 76 52.6
DCAR_013453 Daucus carota HOM05D006703 ORTHO05D008389 1.3e-14 82.8 67 56.7
Potri.016G066800 Populus trichocarpa HOM05D006703 ORTHO05D008389 1.3e-14 82.8 69 60.9
Lalb_Chr01g0017771 Lupinus albus HOM05D006703 ORTHO05D008389 1.8e-14 82.4 69 58.0
Gohir.A01G200000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 3.9e-14 81.3 67 61.2
Gohir.D01G190000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 5.1e-14 80.9 67 61.2
Lj1g0009334 Lotus japonicus HOM05D006703 ORTHO05D008389 6.7e-14 80.5 67 61.2
Sabra16G0068200 Salix brachista HOM05D006703 ORTHO05D008389 6.7e-14 80.5 69 59.4
Peaxi162Scf00203g00910 Petunia axillaris HOM05D006703 ORTHO05D008389 8.7e-14 80.1 66 59.1
RcHm_v2.0_Chr3g0477081 Rosa chinensis HOM05D006703 ORTHO05D008389 8.7e-14 80.1 68 58.8
HanXRQChr02g0052921 Helianthus annuus HOM05D006703 ORTHO05D008389 1.1e-13 79.7 58 65.5
Gorai.002G233800 Gossypium raimondii HOM05D006703 ORTHO05D008389 1.9e-13 79.0 67 58.2
Haze_20110 Corylus avellana HOM05D006703 ORTHO05D008389 4.3e-13 77.8 62 59.7
FAN02G3199 Fragaria x ananassa HOM05D006703 ORTHO05D008389 5.7e-13 77.4 68 58.8
FAN05G2374 Fragaria x ananassa HOM05D006703 ORTHO05D008389 5.7e-13 77.4 68 58.8
FAN05G3633 Fragaria x ananassa HOM05D006703 ORTHO05D008389 5.7e-13 77.4 68 58.8
FAN09G4763 Fragaria x ananassa HOM05D006703 ORTHO05D008389 5.7e-13 77.4 68 60.3
Duzib093G0046 Durio zibethinus HOM05D006703 ORTHO05D008389 9.6e-13 76.6 67 59.7
Oeu020165.3 Olea europaea HOM05D006703 ORTHO05D008389 9.6e-13 76.6 74 50.0
TPR.G34442 Trifolium pratense HOM05D006703 ORTHO05D008389 9.6e-13 76.6 71 56.3
Duzib106G1644 Durio zibethinus HOM05D006703 ORTHO05D008389 1.3e-12 76.3 67 58.2
Hund14986 Selenicereus undatus HOM05D006703 ORTHO05D008389 1.3e-12 76.3 63 52.4
MSTRG.26583 Avicennia marina HOM05D006703 ORTHO05D008389 2.1e-12 75.5 67 58.2
TWI74G0187 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 2.1e-12 75.5 78 51.3
MD12G1044300 Malus domestica HOM05D006703 ORTHO05D008389 2.8e-12 75.1 68 52.9
COL.COLO4_29515 Corchorus olitorius HOM05D006703 ORTHO05D008389 3.7e-12 74.7 68 60.3
Ca_09072_v3 Cicer arietinum L. HOM05D006703 ORTHO05D008389 4.8e-12 74.3 70 54.3
ECA233G5710 Erigeron canadensis HOM05D006703 ORTHO05D008389 4.8e-12 74.3 81 44.4
Eucgr.K01914 Eucalyptus grandis HOM05D006703 ORTHO05D008389 6.2e-12 73.9 66 59.1
SGA_v2.0_scaffold31G12818 Striga asiatica HOM05D006703 ORTHO05D008389 6.2e-12 73.9 69 53.6
Actinidia03970 Actinidia chinensis HOM05D006703 ORTHO05D008389 1.1e-11 73.2 51 66.7
Cfa020082 Carpinus fangiana HOM05D006703 ORTHO05D008389 1.4e-11 72.8 61 60.7
Sopen10g032260 Solanum pennellii HOM05D006703 ORTHO05D008389 2.4e-11 72.0 62 58.1
Thecc.05G108700 Theobroma cacao HOM05D006703 ORTHO05D008389 2.4e-11 72.0 67 55.2
Medtr7g106660 Medicago truncatula HOM05D006703 ORTHO05D008389 3.1e-11 71.6 70 51.4
PGSC0003DMG400028230 Solanum tuberosum HOM05D006703 ORTHO05D008389 3.1e-11 71.6 62 56.5
RcHm_v2.0_Chr3g0477171 Rosa chinensis HOM05D006703 ORTHO05D008389 4.0e-11 71.2 68 54.4
MD14G1043200 Malus domestica HOM05D006703 ORTHO05D008389 5.3e-11 70.9 68 54.4
Prupe.7G090900 Prunus persica HOM05D006703 ORTHO05D008389 6.9e-11 70.5 68 55.9
TWI77G0507 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 9.0e-11 70.1 67 52.2
FvH4_6g20830 Fragaria vesca HOM05D006703 ORTHO05D008389 1.5e-10 69.3 68 54.4
FAN14G3264 Fragaria x ananassa HOM05D006703 ORTHO05D008389 1.5e-10 69.3 68 54.4
Solyc10g081750.1 Solanum lycopersicum HOM05D006703 ORTHO05D008389 3.4e-10 68.2 62 54.8
arahy.Tifrunner.gnm1.ann1.8DDT0E Arachis hypogaea HOM05D006703 ORTHO05D008389 4.5e-10 67.8 71 54.9
arahy.Tifrunner.gnm1.ann1.W58RTV Arachis hypogaea HOM05D006703 ORTHO05D008389 4.5e-10 67.8 71 54.9
QL07p026854 Quercus lobata HOM05D006703 ORTHO05D008389 4.5e-10 67.8 51 62.7
MSTRG.19329 Avicennia marina HOM05D006703 ORTHO05D008389 7.6e-10 67.0 72 45.8
PGR004G0398 Punica granatum HOM05D006703 ORTHO05D008389 7.6e-10 67.0 69 55.1
Atru.chr8.1299 Acer truncatum HOM05D006703 ORTHO05D008389 1.0e-09 66.6 58 55.2
HanXRQChr13g0398671 Helianthus annuus HOM05D006703 ORTHO05D008389 2.2e-09 65.5 78 42.3
MELO3C009564.2 Cucumis melo HOM05D006703 ORTHO05D008389 2.9e-09 65.1 62 51.6
ClCG10G018080 Citrullus lanatus HOM05D006703 ORTHO05D008389 5.0e-09 64.3 61 52.5
PSO017G1234 Papaver somniferum HOM05D006703 ORTHO05D008389 5.0e-09 64.3 73 47.9
EL10Ac5g11822 Beta vulgaris HOM05D006703 ORTHO05D008389 1.1e-08 63.2 68 48.5
CsaV3_3G038210 Cucumis sativus L. HOM05D006703 ORTHO05D008389 1.4e-08 62.8 57 54.4
Manes.08G036200 Manihot esculenta HOM05D006703 ORTHO05D008389 1.4e-08 62.8 69 47.8
EL10Ac9g21006 Beta vulgaris HOM05D006703 ORTHO05D008389 1.9e-08 62.4 68 48.5
AUR62030691 Chenopodium quinoa HOM05D006703 ORTHO05D008389 1.9e-08 62.4 63 49.2
Sed0006927 Sechium edule HOM05D006703 ORTHO05D008389 2.5e-08 62.0 61 45.9
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 3.2e-08 61.6 64 48.4
Cc06_g06870 Coffea canephora HOM05D006703 ORTHO05D008389 3.2e-08 61.6 69 50.7
Psat3g028120 Pisum sativum HOM05D006703 ORTHO05D008389 3.2e-08 61.6 68 50.0
Manes.09G042800 Manihot esculenta HOM05D006703 ORTHO05D008389 9.3e-08 60.1 68 51.5
CANSAT64G1940 Cannabis sativa HOM05D006703 ORTHO05D008389 1.2e-07 59.7 64 45.3
Sc22g0003150 Simmondsia chinensis HOM05D006703 ORTHO05D008389 1.2e-07 59.7 58 48.3
Phvul.001G197500 Phaseolus vulgaris HOM05D006703 ORTHO05D008389 2.1e-07 58.9 56 51.8
Hund10833 Selenicereus undatus HOM05D006703 ORTHO05D008389 2.1e-07 58.9 67 47.8
Migut.J00741 Erythranthe guttata HOM05D006703 ORTHO05D008389 3.5e-07 58.2 73 52.1
Thhalv10017281m.g Eutrema salsugineum HOM05D006703 ORTHO05D008389 7.9e-07 57.0 73 42.5
Sed0010784 Sechium edule HOM05D006703 ORTHO05D008389 7.9e-07 57.0 61 44.3
MBI05_g29094_MAGBIO Magnolia biondii HOM05D006703 ORTHO05D008389 1.8e-06 55.8 35 68.6
SGA_v2.0_scaffold392G50677 Striga asiatica HOM05D006703 ORTHO05D008389 1.8e-06 55.8 66 45.5
BraA04t18236Z Brassica rapa HOM05D006703 ORTHO05D008389 6.7e-06 53.9 59 45.8


User provided reference genes

Program Settings