Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 2.2e-50 203.4 265 100.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 3.0e-23 113.2 256 64.8
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.8e-21 106.7 243 75.3
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 6.3e-21 105.5 243 74.5
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.3e-21 105.5 248 73.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 8.2e-21 105.1 241 75.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 8.2e-21 105.1 252 73.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-20 104.0 252 60.7
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.1e-20 102.8 248 77.0
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 4.1e-20 102.8 261 69.7
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 6.9e-20 102.1 249 71.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.5e-19 100.9 252 72.2
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 7.7e-19 98.6 245 73.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.0e-18 98.2 248 71.8
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.3e-18 97.8 245 71.8
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.7e-18 97.4 244 72.5
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.7e-18 97.4 248 72.6
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.2e-18 97.1 245 72.2
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 3.8e-18 96.3 248 70.2
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 6.5e-18 95.5 252 71.0
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.5e-18 95.5 247 71.7
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.5e-18 95.5 242 71.9
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.5e-18 95.1 252 70.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 8.5e-18 95.1 252 71.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.4e-17 94.4 248 71.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.9e-17 94.0 105 57.1
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.9e-17 94.0 252 70.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.9e-17 94.0 271 43.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.5e-17 93.6 248 71.4
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.5e-17 93.6 248 69.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 3.2e-17 93.2 242 72.7
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.2e-17 93.2 248 71.8
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 5.5e-17 92.4 250 72.0
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.5e-17 92.4 248 69.8
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.5e-17 92.4 248 71.4
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.2e-17 92.0 247 70.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 7.2e-17 92.0 253 70.0
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.2e-17 92.0 105 53.3
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 7.2e-17 92.0 245 72.2
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.2e-16 91.3 251 60.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-16 91.3 245 76.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.2e-16 91.3 252 69.8
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-16 90.9 245 71.4
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-16 90.9 245 71.4
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.6e-16 90.9 245 72.7
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.6e-16 90.9 247 69.6
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.1e-16 90.5 245 72.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.1e-16 90.5 248 69.0
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.7e-16 90.1 245 71.8
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.7e-16 90.1 245 71.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.7e-16 90.1 245 71.8
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.6e-16 89.7 247 71.7
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.6e-16 89.7 243 58.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 4.6e-16 89.4 247 71.3
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.6e-16 89.4 243 72.4
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.6e-16 89.4 243 72.4
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.6e-16 89.4 247 70.9
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 4.6e-16 89.4 252 69.4
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.6e-16 89.4 245 72.2
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 4.6e-16 89.4 245 72.2
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 6.1e-16 89.0 243 72.8
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 6.1e-16 89.0 245 72.7
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 6.1e-16 89.0 252 69.4
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 6.1e-16 89.0 245 71.8
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.9e-16 88.6 252 69.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 7.9e-16 88.6 220 76.8
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.0e-15 88.2 252 70.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.0e-15 88.2 253 69.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.0e-15 88.2 241 71.0
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.4e-15 87.8 103 51.5
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.8e-15 87.4 252 70.2
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.3e-15 87.0 247 69.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.0e-15 86.7 103 50.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.0e-15 86.7 243 70.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 3.0e-15 86.7 249 70.3
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.9e-15 86.3 103 52.4
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 5.1e-15 85.9 105 50.5
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 5.1e-15 85.9 105 52.4
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 5.1e-15 85.9 247 69.6
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 5.1e-15 85.9 246 69.1
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 5.1e-15 85.9 107 49.5
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 8.8e-15 85.1 252 69.4
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.8e-15 85.1 245 70.2
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.8e-15 85.1 246 69.9
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.5e-14 84.3 243 56.8
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.0e-14 84.0 242 69.0
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.3e-14 83.2 252 69.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 3.3e-14 83.2 242 71.5
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.3e-14 83.2 243 70.8
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.3e-14 83.2 252 68.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 5.7e-14 82.4 240 71.2
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.4e-14 82.0 245 71.0
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.7e-14 81.6 240 68.8
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 9.7e-14 81.6 247 68.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.7e-14 81.6 143 42.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.7e-14 81.6 143 42.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-13 81.3 234 71.4
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.3e-13 81.3 246 74.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.3e-13 81.3 252 68.3
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-13 81.3 240 69.2
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.3e-13 81.3 244 69.7
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-13 80.5 240 68.8
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.8e-13 79.3 247 73.7
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.3e-13 79.0 249 66.3
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 6.3e-13 79.0 249 68.7
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 8.2e-13 78.6 247 73.7
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.1e-12 78.2 266 65.8
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.1e-12 78.2 266 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.4e-12 77.8 247 68.4
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.4e-12 77.8 240 70.4
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.4e-12 77.8 230 72.2
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.8e-12 77.4 241 71.0
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.8e-12 77.4 98 51.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.8e-12 77.4 245 73.9
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.8e-12 77.4 230 72.2
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.8e-12 77.4 242 71.1
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.4e-12 77.0 98 49.0
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.4e-12 77.0 241 68.9
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.1e-12 76.6 97 51.5
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 3.1e-12 76.6 234 75.6
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.1e-12 76.6 241 69.3
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.1e-12 76.3 98 53.1
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 4.1e-12 76.3 244 68.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.3e-12 75.9 241 69.7
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.3e-12 75.9 99 50.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 6.9e-12 75.5 241 70.1
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 9.1e-12 75.1 241 70.1
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 9.1e-12 75.1 245 73.5
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.2e-11 74.7 97 49.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.2e-11 74.7 244 68.4
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.5e-11 74.3 241 69.3
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.5e-11 74.3 104 49.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.5e-11 74.3 104 48.1
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.5e-11 74.3 220 74.5
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.6e-11 73.6 241 68.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.5e-11 72.8 252 50.4
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 4.5e-11 72.8 45 82.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 5.9e-11 72.4 245 68.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 7.7e-11 72.0 250 66.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 7.7e-11 72.0 240 68.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 7.7e-11 72.0 240 68.3
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.0e-10 71.6 246 65.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.0e-10 71.6 243 67.1
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.7e-10 70.9 240 68.8
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.7e-10 70.9 240 67.9
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.9e-10 70.1 246 67.1
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.9e-10 70.1 241 67.6
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 6.5e-10 68.9 240 67.9
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.5e-10 68.9 102 46.1
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.5e-10 68.9 102 46.1
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.5e-10 68.6 97 47.4
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.5e-10 68.6 97 47.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 8.5e-10 68.6 94 46.8
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.9e-09 67.4 167 81.4
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.2e-09 66.6 222 72.5
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.1e-08 63.9 246 66.3
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.1e-08 63.9 82 46.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.7e-08 63.5 246 67.1
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.7e-08 63.5 104 44.2
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.6e-08 63.2 100 43.0
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.3e-07 60.5 64 53.1
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 3.0e-07 60.1 41 73.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 8.8e-07 58.5 244 65.6
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.5e-06 57.8 41 70.7
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 5.7e-06 55.8 83 41.0
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 9.7e-06 55.1 41 68.3


User provided reference genes

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