Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 9.6e-115 416.8 201 100.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.2e-61 240.4 129 86.0
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.0e-55 220.7 127 78.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.1e-54 217.2 132 73.5
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.3e-54 215.3 130 75.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 9.5e-54 214.2 130 73.8
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.2e-53 213.8 126 77.0
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.1e-53 213.0 129 76.0
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.1e-53 213.0 129 76.7
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 2.1e-53 213.0 134 72.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.8e-53 212.6 130 74.6
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 2.3e-52 209.5 128 74.2
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.3e-52 209.5 129 72.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 6.8e-52 208.0 134 70.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.2e-51 207.2 128 74.2
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.6e-51 206.1 129 73.6
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.6e-51 206.1 129 73.6
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.4e-51 205.7 130 71.5
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 3.4e-51 205.7 132 70.5
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 3.4e-51 205.7 131 71.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-51 205.7 131 71.0
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.8e-51 204.9 129 73.6
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 7.5e-51 204.5 129 72.1
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.5e-51 204.5 131 70.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.8e-51 204.1 126 73.8
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.8e-51 204.1 126 73.8
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.3e-50 203.8 143 61.5
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.9e-50 202.6 128 67.2
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-50 201.8 156 60.9
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.4e-50 201.4 134 70.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 8.3e-50 201.1 131 69.5
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 8.3e-50 201.1 129 72.1
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.1e-49 200.7 129 74.4
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.9e-49 199.9 127 70.1
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 2.4e-49 199.5 140 67.9
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.2e-49 199.1 140 67.9
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 4.1e-49 198.7 128 68.8
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 7.0e-49 198.0 128 71.1
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 7.0e-49 198.0 129 69.0
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 9.2e-49 197.6 129 68.2
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.0e-48 196.4 129 67.4
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 2.0e-48 196.4 129 67.4
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.0e-48 196.4 130 70.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 2.0e-48 196.4 128 69.5
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.7e-48 196.1 128 69.5
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 4.6e-48 195.3 130 70.8
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 6.0e-48 194.9 131 67.9
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 6.0e-48 194.9 131 67.9
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 6.0e-48 194.9 128 70.3
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.0e-47 194.1 131 68.7
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.0e-47 194.1 124 72.6
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.0e-47 194.1 124 74.2
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-47 193.4 128 70.3
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-47 193.4 128 70.3
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-47 193.4 128 70.3
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.7e-47 193.4 129 66.7
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.3e-47 193.0 131 65.6
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 3.9e-47 192.2 129 65.1
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 3.9e-47 192.2 129 70.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.9e-47 192.2 126 70.6
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 5.0e-47 191.8 129 65.9
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.6e-47 191.4 128 64.8
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.1e-46 190.7 127 66.1
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.1e-46 190.7 132 68.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-46 190.7 128 68.8
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-46 190.3 128 63.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-46 190.3 128 63.3
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-46 190.3 129 69.8
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.9e-46 189.9 140 66.4
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.9e-46 189.9 130 71.5
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.3e-46 188.7 127 66.1
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 4.3e-46 188.7 128 66.4
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 4.3e-46 188.7 129 67.4
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 4.3e-46 188.7 130 68.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 4.3e-46 188.7 129 69.0
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 5.6e-46 188.3 128 68.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.6e-46 188.3 129 63.6
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.6e-46 188.3 129 63.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.3e-46 188.0 129 62.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 9.5e-46 187.6 125 67.2
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 9.5e-46 187.6 128 68.0
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 9.5e-46 187.6 128 68.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.2e-45 187.2 132 66.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.2e-45 187.2 138 63.0
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 2.1e-45 186.4 137 64.2
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.1e-45 186.4 128 65.6
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-45 186.4 128 65.6
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.1e-45 186.4 131 64.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.8e-45 186.0 129 62.0
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.8e-45 186.0 129 62.8
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.8e-45 186.0 134 64.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.7e-45 185.3 131 66.4
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.7e-45 185.3 131 66.4
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 6.2e-45 184.9 128 68.8
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 6.2e-45 184.9 130 66.9
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 8.0e-45 184.5 128 67.2
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 8.0e-45 184.5 138 64.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.4e-44 183.7 136 63.2
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-44 183.7 123 67.5
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.8e-44 183.3 132 67.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.3e-44 183.0 129 62.8
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 2.3e-44 183.0 122 68.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.1e-44 182.6 133 64.7
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 3.1e-44 182.6 127 65.4
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.1e-44 182.6 129 65.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.1e-44 182.6 127 65.4
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 4.0e-44 182.2 131 64.9
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 5.2e-44 181.8 133 63.9
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.2e-44 181.8 129 65.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 6.8e-44 181.4 127 63.0
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.8e-44 181.4 129 65.9
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 8.9e-44 181.0 129 65.1
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.2e-43 180.6 128 64.8
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.6e-43 179.5 112 79.5
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 5.8e-43 178.3 127 65.4
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.3e-42 177.2 133 64.7
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-42 177.2 128 68.0
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.7e-42 176.8 133 60.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.7e-42 176.8 130 66.2
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 3.7e-42 175.6 128 57.8
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 6.4e-42 174.9 131 65.6
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.4e-41 173.7 129 66.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.4e-41 173.7 129 58.9
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-41 173.3 167 52.7
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.4e-41 172.9 134 59.7
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-41 172.2 129 65.1
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 4.1e-41 172.2 131 57.3
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 5.4e-41 171.8 127 63.8
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 9.2e-41 171.0 134 64.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.1e-40 169.9 118 67.8
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.7e-40 169.5 134 59.0
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.0e-40 168.3 124 66.1
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 7.8e-40 167.9 129 62.8
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.0e-39 167.5 122 63.9
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.7e-39 166.8 113 69.9
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.3e-39 166.4 128 63.3
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.5e-38 163.7 131 55.7
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.5e-38 162.9 128 53.1
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 9.5e-38 161.0 120 65.8
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 9.5e-38 161.0 126 62.7
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.2e-37 160.6 121 60.3
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.4e-36 157.1 129 55.0
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-36 155.6 192 43.8
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 5.4e-33 145.2 128 56.2
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 7.1e-33 144.8 143 49.0
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.2e-32 144.1 125 51.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.2e-32 144.1 91 68.1
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.3e-31 139.8 129 58.9
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.6e-29 133.7 89 65.2
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.8e-29 132.9 121 53.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.2e-29 131.7 129 52.7
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 8.1e-29 131.3 129 51.2
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 5.8e-27 125.2 138 47.1
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 7.8e-24 114.8 75 74.7
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.1e-21 106.7 102 52.9
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.7e-21 105.5 116 45.7
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.4e-20 104.0 131 42.7
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.5e-19 100.5 132 40.2
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 2.9e-18 96.3 66 71.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.4e-17 94.0 66 59.1
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-15 87.8 63 69.8
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.3e-15 87.4 45 75.6
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.3e-15 86.7 61 67.2
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.0e-15 86.3 65 66.2
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 7.3e-14 81.6 45 73.3
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.3e-13 80.9 40 75.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 8.1e-13 78.2 100 45.0
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 7.6e-11 71.6 63 57.1


User provided reference genes

Program Settings