Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16400 Davidia involucrata HOM05D006941 ORTHO05D008361 1.1e-43 181.0 254 100.0
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 3.6e-10 69.7 45 73.3
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 6.2e-10 68.9 36 86.1
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 2.4e-09 67.0 35 85.7
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 5.3e-09 65.9 35 82.9
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 5.3e-09 65.9 36 80.6
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 5.3e-09 65.9 36 80.6
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 6.9e-09 65.5 35 82.9
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 6.9e-09 65.5 35 85.7
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 9.0e-09 65.1 35 82.9
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 9.0e-09 65.1 35 82.9
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 9.0e-09 65.1 35 82.9
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 9.0e-09 65.1 35 82.9
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 9.0e-09 65.1 35 82.9
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 1.2e-08 64.7 35 85.7
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 1.2e-08 64.7 35 80.0
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 82.9
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 80.0
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 80.0
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 80.0
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 82.9
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 82.9
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.5e-08 64.3 35 82.9
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 2.0e-08 63.9 35 82.9
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 2.0e-08 63.9 49 61.2
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 2.0e-08 63.9 48 62.5
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 2.0e-08 63.9 35 77.1
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 2.0e-08 63.9 36 77.8
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 2.6e-08 63.5 49 55.1
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 2.6e-08 63.5 49 57.1
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 2.6e-08 63.5 49 57.1
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 2.6e-08 63.5 35 80.0
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 2.6e-08 63.5 37 70.3
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.6e-08 63.5 35 77.1
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 2.6e-08 63.5 35 80.0
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 3.4e-08 63.2 35 77.1
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 3.4e-08 63.2 35 77.1
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 3.4e-08 63.2 37 73.0
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 3.4e-08 63.2 35 82.9
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 4.5e-08 62.8 36 75.0
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 4.5e-08 62.8 37 70.3
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 4.5e-08 62.8 35 77.1
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 5.8e-08 62.4 35 80.0
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 5.8e-08 62.4 35 80.0
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 7.6e-08 62.0 36 77.8
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 7.6e-08 62.0 41 68.3
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 7.6e-08 62.0 36 77.8
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 7.6e-08 62.0 39 71.8
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 9.9e-08 61.6 35 80.0
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 9.9e-08 61.6 35 77.1
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 9.9e-08 61.6 35 77.1
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 1.3e-07 61.2 35 77.1
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 1.3e-07 61.2 35 77.1
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 1.3e-07 61.2 36 75.0
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 1.3e-07 61.2 37 70.3
RcHm_v2.0_Chr1g0363231 Rosa chinensis HOM05D006941 ORTHO05D008361 2.2e-07 60.5 41 68.3
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 2.9e-07 60.1 37 67.6
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 2.9e-07 60.1 37 67.6
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 2.9e-07 60.1 37 67.6
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 2.9e-07 60.1 49 57.1
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 2.9e-07 60.1 36 69.4
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 3.8e-07 59.7 35 77.1
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.8e-07 59.7 35 77.1
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.8e-07 59.7 35 77.1
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.8e-07 59.7 35 77.1
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.8e-07 59.7 35 77.1
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 3.8e-07 59.7 35 77.1
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 3.8e-07 59.7 36 72.2
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 6.4e-07 58.9 35 74.3
MELO3C035183.2 Cucumis melo HOM05D006941 ORTHO05D008361 1.1e-06 58.2 50 58.0
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.1e-06 58.2 35 74.3
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 1.9e-06 57.4 37 62.2
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 1.9e-06 57.4 37 62.2
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 1.9e-06 57.4 34 73.5
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 3.2e-06 56.6 35 65.7
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 4.2e-06 56.2 34 73.5
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 4.2e-06 56.2 35 68.6
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 4.2e-06 56.2 35 68.6
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 4.2e-06 56.2 35 68.6
Actinidia00061 Actinidia chinensis HOM05D006941 ORTHO05D008361 7.1e-06 55.5 43 60.5
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 7.1e-06 55.5 30 83.3
HanXRQChr10g0285751 Helianthus annuus HOM05D006941 ORTHO05D008361 9.3e-06 55.1 31 80.6


User provided reference genes

Program Settings