Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 7.3e-176 620.5 332 100.0
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.0e-57 226.5 329 44.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.7e-45 186.8 310 41.9
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 6.8e-41 172.2 96 89.6
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-38 164.5 425 36.0
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 9.2e-38 161.8 334 39.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.1e-36 156.0 317 39.1
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 6.6e-36 155.6 335 36.1
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 4.4e-32 142.9 289 37.7
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 5.8e-32 142.5 244 41.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 3.8e-31 139.8 283 37.8
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 4.9e-31 139.4 295 35.6
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.9e-30 137.5 431 30.2
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 2.7e-29 133.7 193 44.6
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.5e-29 133.3 203 44.3
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.5e-29 133.3 221 40.7
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.0e-29 132.5 212 43.4
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.0e-28 131.7 201 43.3
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.7e-28 131.0 203 42.9
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.3e-28 130.6 293 34.8
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 3.0e-28 130.2 200 43.5
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 3.9e-28 129.8 222 42.8
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 3.9e-28 129.8 227 39.6
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.1e-28 129.4 208 44.2
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 8.7e-28 128.6 271 36.2
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-27 128.3 134 53.7
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.5e-27 127.9 265 39.2
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.9e-27 127.5 216 39.8
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.9e-27 127.5 193 43.5
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.5e-27 127.1 292 35.3
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 4.3e-27 126.3 205 40.5
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 9.6e-27 125.2 212 43.9
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 9.6e-27 125.2 210 41.0
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 9.6e-27 125.2 345 32.2
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 2.1e-26 124.0 210 40.0
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.1e-26 124.0 222 39.6
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.1e-26 124.0 227 40.1
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 4.7e-26 122.9 248 39.1
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 4.7e-26 122.9 264 38.6
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 8.1e-26 122.1 190 41.6
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 8.1e-26 122.1 291 34.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 8.1e-26 122.1 287 36.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.1e-25 121.7 238 38.7
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.4e-25 121.3 370 31.1
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.8e-25 120.9 245 36.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.8e-25 120.9 224 37.5
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.8e-25 120.9 230 39.1
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.4e-25 120.6 285 36.1
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 3.1e-25 120.2 271 34.7
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 4.0e-25 119.8 140 50.7
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.0e-25 119.8 327 30.9
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 6.9e-25 119.0 278 36.0
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.2e-24 118.2 173 44.5
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-24 117.9 348 32.2
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-24 117.9 260 37.7
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.6e-24 117.1 226 38.9
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.6e-24 117.1 216 40.3
Dinv12155 Davidia involucrata HOM05D000862 ORTHO05D000943 4.4e-24 116.3 65 89.2
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.4e-24 116.3 247 35.2
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.8e-24 115.9 235 38.3
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 7.6e-24 115.5 274 34.3
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 7.6e-24 115.5 238 37.0
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 9.9e-24 115.2 178 42.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 1.3e-23 114.8 142 47.9
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.7e-23 114.4 264 36.0
Dinv18647 Davidia involucrata HOM05D034592 ORTHO05D004267 2.2e-23 114.0 106 60.4
Dinv26262 Davidia involucrata HOM05D034592 ORTHO05D004267 2.2e-23 114.0 106 60.4
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.2e-23 114.0 240 35.8
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.2e-23 114.0 357 32.5
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.9e-23 113.6 178 41.6
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 2.9e-23 113.6 241 36.9
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.8e-23 113.2 107 57.9
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.8e-23 113.2 282 34.8
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 3.8e-23 113.2 265 35.8
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 3.8e-23 113.2 152 48.0
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 6.4e-23 112.5 275 33.8
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.4e-23 112.5 194 41.2
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 6.4e-23 112.5 188 41.5
Dinv19681 Davidia involucrata HOM05D003648 ORTHO05D004267 8.4e-23 112.1 78 80.8
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 8.4e-23 112.1 250 35.2
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.4e-22 110.5 135 48.9
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 4.2e-22 109.8 132 47.7
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 4.2e-22 109.8 203 38.9
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 4.2e-22 109.8 294 33.0
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.2e-22 109.8 260 34.2
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.4e-22 109.4 211 39.3
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 5.4e-22 109.4 235 35.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.2e-21 108.2 299 34.8
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.6e-21 107.8 134 47.8
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.6e-21 107.8 134 47.8
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.1e-21 107.5 169 43.2
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 4.6e-21 106.3 111 54.1
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.6e-21 106.3 214 38.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 4.6e-21 106.3 291 33.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 7.8e-21 105.5 145 44.8
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.0e-20 105.1 105 56.2
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-20 104.8 175 41.7
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-20 104.8 175 41.7
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.3e-20 104.8 96 55.2
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.7e-20 104.4 224 37.5
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.3e-20 104.0 218 33.5
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.3e-20 104.0 131 45.0
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 3.0e-20 103.6 283 31.4
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 3.9e-20 103.2 128 50.8
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 5.1e-20 102.8 292 33.9
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 8.7e-20 102.1 126 48.4
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 8.7e-20 102.1 183 42.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.1e-19 101.7 106 53.8
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.1e-19 101.7 320 29.7
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-19 101.3 169 43.2
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.5e-19 101.3 112 50.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.5e-19 100.5 195 37.4
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.5e-19 100.5 67 70.1
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 2.5e-19 100.5 152 44.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 3.3e-19 100.1 221 37.6
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.3e-19 99.8 216 35.2
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 5.6e-19 99.4 292 31.2
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 7.3e-19 99.0 115 49.6
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 9.6e-19 98.6 211 34.6
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.3e-18 98.2 278 32.4
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.3e-18 98.2 66 69.7
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.6e-18 97.8 91 58.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 2.1e-18 97.4 164 42.7
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.1e-18 97.4 106 51.9
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.1e-18 97.4 75 65.3
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 6.2e-18 95.9 110 50.0
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 8.1e-18 95.5 144 43.1
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.1e-17 95.1 146 43.2
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.1e-17 95.1 199 37.2
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.8e-17 94.4 223 35.0
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 2.4e-17 94.0 146 41.8
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.4e-17 94.0 146 41.8
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.1e-17 93.6 123 44.7
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 6.9e-17 92.4 101 50.5
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 6.9e-17 92.4 165 41.2
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 6.9e-17 92.4 142 43.0
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 9.0e-17 92.0 114 47.4
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 9.0e-17 92.0 103 50.5
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-16 91.7 103 51.5
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-16 91.7 103 51.5
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.2e-16 91.7 103 51.5
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.2e-16 91.7 213 35.7
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.5e-16 91.3 145 43.4
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 2.0e-16 90.9 153 40.5
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-16 90.9 144 44.4
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.0e-16 90.9 110 46.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.0e-16 90.9 110 46.4
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 3.4e-16 90.1 346 26.9
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 9.9e-16 88.6 98 50.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 9.9e-16 88.6 98 50.0
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 9.9e-16 88.6 153 38.6
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.9e-15 87.0 163 38.0
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 6.4e-15 85.9 94 50.0
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 8.4e-15 85.5 94 50.0
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.4e-14 84.0 59 61.0
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.4e-14 84.0 44 79.5
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 3.2e-14 83.6 92 50.0
COL.COLO4_29345 Corchorus olitorius HOM05D014635 ORTHO05D014310 3.2e-14 83.6 220 30.0
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 7.1e-14 82.4 40 82.5
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 9.3e-14 82.0 94 48.9
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.1e-13 80.9 108 49.1
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 4.6e-13 79.7 143 38.5
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 6.0e-13 79.3 50 66.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.0e-12 78.6 227 27.8
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.0e-12 78.6 111 45.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.0e-12 78.6 83 49.4
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 6.7e-12 75.9 339 27.7
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 3.7e-10 70.1 238 27.3
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.7e-10 70.1 68 51.5
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.8e-10 69.7 39 71.8
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 8.1e-10 68.9 142 37.3
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-09 68.2 86 44.2
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-09 68.2 39 71.8
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 5.3e-09 66.2 151 34.4
Gohir.A01G190633 Gossypium hirsutum HOM05D014635 ORTHO05D014310 2.0e-08 64.3 196 30.6
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.6e-08 63.9 54 51.9
Duzib093G0164 Durio zibethinus HOM05D014635 ORTHO05D014310 1.7e-07 61.2 172 29.1
Gohir.D01G179100 Gossypium hirsutum HOM05D014635 ORTHO05D014310 2.9e-07 60.5 216 26.9
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 4.9e-07 59.7 178 29.8
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.2e-06 57.0 37 59.5


User provided reference genes

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