Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 0.0e+00 1520.0 780 100.0
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 0.0e+00 1121.7 827 71.3
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 0.0e+00 1112.8 890 67.4
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 0.0e+00 1081.6 724 77.6
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 0.0e+00 1079.7 697 79.9
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.6e-311 1072.4 720 79.7
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.4e-309 1064.7 756 73.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 7.6e-293 1010.4 742 71.8
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.0e-292 1007.7 765 69.7
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 6.5e-292 1007.3 757 70.1
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.5e-291 1004.2 891 62.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 9.3e-291 1003.4 826 66.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 2.1e-290 1002.3 816 66.3
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 7.9e-290 1000.3 751 70.7
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 7.9e-290 1000.3 784 68.0
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 3.9e-289 998.0 739 70.9
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.1e-286 989.9 756 68.9
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 5.3e-286 987.6 762 69.2
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.3e-284 983.0 758 68.5
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 3.9e-281 971.5 762 67.8
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.9e-281 971.5 737 68.7
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.0e-280 969.1 744 68.0
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.4e-280 968.0 769 67.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 4.4e-280 968.0 741 68.4
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.1e-278 963.4 744 67.5
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.4e-278 962.2 841 63.0
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 6.9e-278 960.7 758 66.4
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 9.1e-278 960.3 777 67.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 7.7e-277 957.2 755 68.1
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.7e-276 956.1 750 67.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 3.8e-276 954.9 731 67.2
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 5.5e-275 951.0 739 66.8
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 5.5e-275 951.0 723 68.0
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 4.7e-274 948.0 737 67.0
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.0e-273 946.8 739 66.8
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.0e-273 946.8 689 69.4
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.0e-273 946.8 751 66.3
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 3.9e-273 944.9 831 62.1
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 6.7e-273 944.1 748 67.5
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 6.7e-273 944.1 737 67.3
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.5e-272 943.0 754 66.3
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.0e-272 942.6 714 68.6
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 7.4e-272 940.6 738 66.9
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.7e-271 939.5 700 70.9
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 5.3e-270 934.5 763 64.6
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 5.3e-270 934.5 762 64.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 9.1e-270 933.7 741 66.1
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.6e-269 932.9 710 67.6
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 2.0e-269 932.6 738 65.4
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 2.9e-268 928.7 732 66.8
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.5e-267 925.6 732 66.7
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.0e-265 920.2 728 66.9
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.4e-265 919.8 755 64.2
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 3.0e-265 918.7 765 63.4
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 8.8e-265 917.1 775 63.2
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 2.8e-263 912.1 761 65.0
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.8e-263 911.4 789 62.0
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.3e-262 907.9 722 65.7
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 7.0e-262 907.5 792 63.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 4.5e-261 904.8 758 63.1
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.5e-260 900.6 811 61.8
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 5.5e-259 897.9 741 66.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.8e-257 892.9 687 68.0
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.3e-257 892.5 756 63.1
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 6.8e-257 891.0 734 64.9
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 3.4e-256 888.6 742 62.8
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.3e-255 886.7 775 61.7
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.7e-255 886.3 775 62.1
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.2e-253 880.2 741 63.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.7e-253 879.0 822 56.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.0e-252 877.1 759 61.7
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 9.5e-251 870.5 753 61.9
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 5.7e-248 861.3 669 67.1
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.2e-245 853.6 701 63.8
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.0e-245 852.8 927 54.7
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.0e-244 850.5 742 63.5
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.1e-243 847.0 759 60.6
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.1e-243 847.0 766 59.3
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.6e-242 843.2 785 58.6
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 2.3e-241 839.3 766 59.3
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 9.8e-240 833.9 666 65.0
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.7e-239 833.2 842 54.3
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.6e-237 826.6 687 63.3
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.3e-236 823.5 684 63.5
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.1e-235 820.5 687 62.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.5e-232 807.7 693 61.2
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 4.7e-218 761.9 688 60.0
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 3.5e-213 745.7 720 57.8
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 6.0e-213 745.0 763 56.2
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 6.0e-213 745.0 763 56.2
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 7.8e-213 744.6 632 63.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 2.3e-212 743.0 714 53.4
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 3.9e-212 742.3 711 57.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 6.9e-209 731.5 434 85.0
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.1e-204 715.3 623 62.1
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 6.6e-204 714.9 780 53.1
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 3.7e-194 682.6 698 55.9
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 4.8e-186 655.6 670 54.2
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.9e-185 651.7 550 63.6
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 6.9e-185 651.7 642 56.5
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 2.5e-182 643.3 734 48.1
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.8e-170 602.4 830 42.7
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 8.5e-167 591.7 399 73.9
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.0e-164 584.7 616 55.7
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 3.0e-164 583.2 504 64.9
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.0e-159 568.2 696 45.0
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.3e-156 557.0 575 51.0
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 3.9e-156 556.2 485 63.5
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.7e-154 549.7 443 63.0
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.3e-148 530.4 496 60.1
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 8.9e-124 448.7 260 83.5
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 4.4e-115 419.9 573 43.5
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 2.2e-106 391.0 470 50.4
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 8.4e-90 335.9 354 53.1
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 2.1e-80 304.7 225 74.7
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.9e-79 300.4 194 73.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.2e-73 280.8 173 81.5
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 3.1e-68 264.2 219 63.5
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.5e-64 250.8 161 76.4
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.5e-51 208.8 142 70.4
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.7e-51 206.5 118 86.4
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.2e-50 204.9 172 61.0
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 6.1e-48 196.8 140 66.4
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.0e-44 183.3 114 78.9
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 2.2e-37 161.8 99 78.8
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 3.7e-37 161.0 684 24.4
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.8e-31 142.1 172 50.6
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.5e-30 139.0 207 37.2
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-30 137.1 157 42.0
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 3.1e-28 131.3 100 64.0
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.1e-28 131.0 91 68.1
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.7e-27 126.7 74 81.1
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.3e-21 109.4 544 21.5
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.7e-21 109.0 90 57.8
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.7e-21 109.0 90 57.8
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 1.1e-20 106.3 58 86.2
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 9.1e-20 103.2 58 81.0
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 9.1e-20 103.2 58 79.3
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 5.9e-19 100.5 60 80.0
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 2.3e-18 98.6 58 79.3
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 3.8e-18 97.8 76 63.2
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.1e-17 96.3 154 35.7
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 1.1e-17 96.3 58 75.9
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 1.9e-17 95.5 58 79.3
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 1.9e-17 95.5 53 83.0
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 3.3e-17 94.7 56 76.8
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 4.2e-17 94.4 58 75.9
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 5.5e-17 94.0 95 52.6
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 7.2e-17 93.6 63 69.8
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 9.5e-17 93.2 402 26.4
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.2e-16 92.8 58 74.1
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 1.2e-16 92.8 54 85.2
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 2.8e-16 91.7 62 71.0
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 8.0e-16 90.1 53 79.2
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 1.4e-15 89.4 60 75.0
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 2.3e-15 88.6 58 69.0
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 3.0e-15 88.2 53 73.6
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 4.0e-15 87.8 63 71.4
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 5.2e-15 87.4 52 76.9
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 5.2e-15 87.4 59 69.5
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.5e-14 85.9 51 74.5
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 1.5e-14 85.9 59 69.5
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 2.0e-14 85.5 55 72.7
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 5.7e-14 84.0 60 68.3
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 2.9e-13 81.6 60 66.7
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 3.7e-13 81.3 60 68.3
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 6.3e-13 80.5 57 68.4
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 4.1e-12 77.8 50 76.0
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 3.5e-11 74.7 62 64.5
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.6e-11 74.3 47 76.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-09 68.2 58 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.8e-08 65.1 70 51.4
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 1.0e-07 63.2 69 50.7
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 1.0e-07 63.2 33 81.8
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 6.8e-07 60.5 37 73.0
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 2.0e-06 58.9 39 64.1


User provided reference genes

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