Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16258 Davidia involucrata HOM05D000031 ORTHO05D185526 3.8e-102 374.8 184 100.0
Actinidia02915 Actinidia chinensis HOM05D000031 ORTHO05D001864 4.2e-16 89.0 56 76.8
Haze_17124 Corylus avellana HOM05D000031 ORTHO05D001864 3.0e-14 82.8 53 69.8
Lj8C79G4 Lonicera japonica HOM05D000031 ORTHO05D009851 6.7e-14 81.6 45 86.7
Hma1.2p1_2379F.1_g320950 Hydrangea macrophylla HOM05D000031 ORTHO05D001864 1.1e-13 80.9 64 67.2
Hma1.2p1_0039F.1_g024630 Hydrangea macrophylla HOM05D000031 ORTHO05D001864 5.7e-13 78.6 64 65.6
Cfa001421 Carpinus fangiana HOM05D000031 ORTHO05D001864 2.8e-12 76.3 52 63.5
Nn6g35622 Nelumbo nucifera HOM05D000031 ORTHO05D001864 8.2e-12 74.7 50 70.0
Gohir.D10G235200 Gossypium hirsutum HOM05D000031 ORTHO05D001864 1.4e-11 73.9 86 48.8
GSVIVG01016473001 Vitis vinifera HOM05D000031 ORTHO05D001864 1.4e-11 73.9 51 68.6
GSVIVG01016475001 Vitis vinifera HOM05D000031 ORTHO05D001864 1.4e-11 73.9 48 70.8
TAR623G0104 Trochodendron aralioides HOM05D000031 ORTHO05D001864 2.4e-11 73.2 52 69.2
Lsat_1_v5_gn_2_118001 Lactuca sativa HOM05D000031 ORTHO05D001864 4.1e-11 72.4 49 69.4
Sed0025132 Sechium edule HOM05D000031 ORTHO05D001864 4.1e-11 72.4 55 67.3
Gohir.A09G153700 Gossypium hirsutum HOM05D000031 ORTHO05D001864 9.1e-11 71.2 55 60.0
HanXRQChr10g0312701 Helianthus annuus HOM05D000031 ORTHO05D001864 1.2e-10 70.9 59 59.3
Thecc.10G039900 Theobroma cacao HOM05D000031 ORTHO05D001864 1.2e-10 70.9 88 51.1
Gorai.006G170700 Gossypium raimondii HOM05D000031 ORTHO05D001864 1.6e-10 70.5 55 58.2
Prupe.2G240400 Prunus persica HOM05D000031 ORTHO05D001864 1.6e-10 70.5 56 64.3
Hma1.2p1_0039F.1_g024610 Hydrangea macrophylla HOM05D000031 ORTHO05D009851 2.0e-10 70.1 60 61.7
QL08p061394 Quercus lobata HOM05D000031 ORTHO05D001864 2.0e-10 70.1 61 60.7
Gohir.A10G222900 Gossypium hirsutum HOM05D000031 ORTHO05D001864 2.6e-10 69.7 57 64.9
Gorai.011G268800 Gossypium raimondii HOM05D000031 ORTHO05D001864 2.6e-10 69.7 57 64.9
HanXRQChr10g0312661 Helianthus annuus HOM05D000031 ORTHO05D001864 3.5e-10 69.3 61 62.3
ClCG11G006640 Citrullus lanatus HOM05D000031 ORTHO05D001864 4.5e-10 68.9 55 63.6
Gohir.D09G149400 Gossypium hirsutum HOM05D000031 ORTHO05D001864 4.5e-10 68.9 55 56.4
MELO3C029803.2 Cucumis melo HOM05D000031 ORTHO05D001864 5.9e-10 68.6 55 63.6
Duzib083G0002 Durio zibethinus HOM05D000031 ORTHO05D001864 7.7e-10 68.2 51 60.8
Duzib093G0921 Durio zibethinus HOM05D000031 ORTHO05D001864 7.7e-10 68.2 51 60.8
Nn2g13485 Nelumbo nucifera HOM05D000031 ORTHO05D001864 7.7e-10 68.2 58 62.1
Aqoxy1G00835 Aquilegia oxysepala HOM05D000031 ORTHO05D001864 1.7e-09 67.0 58 62.1
CiPaw.02G186900 Carya illinoinensis HOM05D000031 ORTHO05D001864 1.7e-09 67.0 50 66.0
Duzib114G0245 Durio zibethinus HOM05D000031 ORTHO05D001864 1.7e-09 67.0 63 57.1
Ciclev10030949m.g Citrus clementina HOM05D000031 ORTHO05D001864 2.2e-09 66.6 58 56.9
CsaV3_4G009540 Cucumis sativus L. HOM05D000031 ORTHO05D001864 2.2e-09 66.6 55 61.8
CsaV3_6G007570 Cucumis sativus L. HOM05D000031 ORTHO05D001864 2.9e-09 66.2 55 61.8
GSVIVG01034108001 Vitis vinifera HOM05D000031 ORTHO05D001864 2.9e-09 66.2 50 68.0
MBI14_g09019_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D001864 3.8e-09 65.9 50 64.0
MD01G1139800 Malus domestica HOM05D000031 ORTHO05D001864 3.8e-09 65.9 56 62.5
Actinidia26493 Actinidia chinensis HOM05D000031 ORTHO05D001864 5.0e-09 65.5 49 65.3
ECA238G2499 Erigeron canadensis HOM05D000031 ORTHO05D001864 5.0e-09 65.5 54 61.1
Rhsim03G0136100 Rhododendron simsii HOM05D000031 ORTHO05D001864 8.5e-09 64.7 53 62.3
Nitab4.5_0003804g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001864 1.1e-08 64.3 56 60.7
Cpa.g.sc19.265 Carica papaya HOM05D000031 ORTHO05D009851 1.5e-08 63.9 56 64.3
Cpa.g.sc19.266 Carica papaya HOM05D000031 ORTHO05D001864 1.5e-08 63.9 50 66.0
CsaV3_6G001360 Cucumis sativus L. HOM05D000031 ORTHO05D001864 1.5e-08 63.9 55 60.0
Ciclev10013620m.g Citrus clementina HOM05D000031 ORTHO05D001864 2.5e-08 63.2 50 58.0
Nitab4.5_0000987g0100 Nicotiana tabacum HOM05D000031 ORTHO05D001864 4.2e-08 62.4 47 68.1
RcHm_v2.0_Chr1g0368501 Rosa chinensis HOM05D000031 ORTHO05D001864 4.2e-08 62.4 62 56.5
COL.COLO4_25503 Corchorus olitorius HOM05D000031 ORTHO05D001864 5.5e-08 62.0 57 61.4
FAN14G0112 Fragaria x ananassa HOM05D000031 ORTHO05D001864 5.5e-08 62.0 71 56.3
Atru.chr12.373 Acer truncatum HOM05D000031 ORTHO05D001864 9.4e-08 61.2 59 62.7
CAN.G1104.9 Capsicum annuum HOM05D000031 ORTHO05D001864 9.4e-08 61.2 56 58.9
QL07p028944 Quercus lobata HOM05D000031 ORTHO05D001864 9.4e-08 61.2 47 61.7
QL07p029625 Quercus lobata HOM05D000031 ORTHO05D001864 9.4e-08 61.2 47 61.7
Nn2g13484 Nelumbo nucifera HOM05D000031 ORTHO05D001864 1.2e-07 60.8 58 56.9
Peaxi162Scf00658g00425 Petunia axillaris HOM05D000031 ORTHO05D001864 1.2e-07 60.8 62 54.8
Manes.07G119900 Manihot esculenta HOM05D000031 ORTHO05D001864 1.6e-07 60.5 52 65.4
PGSC0003DMG400002038 Solanum tuberosum HOM05D000031 ORTHO05D001864 2.1e-07 60.1 49 63.3
Potri.008G059900 Populus trichocarpa HOM05D000031 ORTHO05D001864 2.7e-07 59.7 50 60.0
RcHm_v2.0_Chr3g0483591 Rosa chinensis HOM05D000031 ORTHO05D001864 2.7e-07 59.7 62 53.2
Solyc12g088040.2 Solanum lycopersicum HOM05D000031 ORTHO05D001864 2.7e-07 59.7 53 62.3
Sopen12g030070 Solanum pennellii HOM05D000031 ORTHO05D001864 2.7e-07 59.7 53 62.3
Migut.F01277 Erythranthe guttata HOM05D000031 ORTHO05D001864 3.6e-07 59.3 49 65.3
PGR031G2930 Punica granatum HOM05D000031 ORTHO05D001864 3.6e-07 59.3 68 48.5
Sabra08G0044000 Salix brachista HOM05D000031 ORTHO05D001864 3.6e-07 59.3 48 58.3
MSTRG.8279 Avicennia marina HOM05D000031 ORTHO05D001864 4.7e-07 58.9 61 54.1
Manes.07G120000 Manihot esculenta HOM05D000031 ORTHO05D001864 6.1e-07 58.5 67 50.7
MSTRG.8278 Avicennia marina HOM05D000031 ORTHO05D001864 8.0e-07 58.2 60 51.7
Migut.F01278 Erythranthe guttata HOM05D000031 ORTHO05D001864 1.0e-06 57.8 56 58.9
FvH4_7g23370 Fragaria vesca HOM05D000031 ORTHO05D001864 1.4e-06 57.4 47 63.8
Potri.006G090200 Populus trichocarpa HOM05D000031 ORTHO05D001864 1.4e-06 57.4 51 51.0
PGR142G2684 Punica granatum HOM05D000031 ORTHO05D001864 1.8e-06 57.0 45 60.0
QL08p061385 Quercus lobata HOM05D000031 ORTHO05D009851 2.3e-06 56.6 50 54.0
FvH4_7g23250 Fragaria vesca HOM05D000031 ORTHO05D001864 3.0e-06 56.2 46 63.0
Sc01g0004630 Simmondsia chinensis HOM05D000031 ORTHO05D001864 3.0e-06 56.2 65 52.3
ATR0665G001 Amborella trichopoda HOM05D000031 ORTHO05D001864 4.0e-06 55.8 55 50.9
Oeu031364.1 Olea europaea HOM05D000031 ORTHO05D001864 4.0e-06 55.8 54 53.7
Cpa.g.sc33.163 Carica papaya HOM05D000031 ORTHO05D001864 5.2e-06 55.5 48 56.2
Sp6g40360 Schrenkiella parvula HOM05D000031 ORTHO05D001864 6.7e-06 55.1 27 77.8
Thecc.05G033000 Theobroma cacao HOM05D000031 ORTHO05D001864 6.7e-06 55.1 35 65.7
Atru.chr8.2047 Acer truncatum HOM05D002357 ORTHO05D002676 8.8e-06 54.7 52 50.0
Cc02_g07380 Coffea canephora HOM05D000031 ORTHO05D001864 8.8e-06 54.7 36 69.4
FvH4_7g23160 Fragaria vesca HOM05D000031 ORTHO05D001864 8.8e-06 54.7 62 54.8
FAN01G0487 Fragaria x ananassa HOM05D000031 ORTHO05D001864 8.8e-06 54.7 62 54.8
FAN03G0519 Fragaria x ananassa HOM05D000031 ORTHO05D001864 8.8e-06 54.7 57 56.1
FAN06G2709 Fragaria x ananassa HOM05D000031 ORTHO05D001864 8.8e-06 54.7 62 54.8
Medtr3g069050 Medicago truncatula HOM05D000031 ORTHO05D001864 8.8e-06 54.7 54 55.6
Nitab4.5_0003362g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001864 8.8e-06 54.7 30 80.0
Nitab4.5_0008396g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001864 8.8e-06 54.7 30 80.0


User provided reference genes

Program Settings