Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16191 Davidia involucrata HOM05D003668 ORTHO05D004242 1.0e-248 862.8 412 100.0
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 5.8e-223 777.3 405 90.6
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 1.9e-205 719.2 405 82.5
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 9.2e-205 716.8 412 80.8
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 2.3e-203 712.2 412 81.8
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 3.0e-203 711.8 413 81.1
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 3.3e-202 708.4 412 80.8
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 9.6e-202 706.8 405 82.7
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 8.9e-200 700.3 405 81.0
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 1.9e-197 692.6 412 78.6
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 2.4e-197 692.2 405 80.7
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 4.2e-197 691.4 405 80.2
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 7.1e-197 690.6 405 80.2
Duzib251G0842 Durio zibethinus HOM05D003668 ORTHO05D004242 7.8e-196 687.2 406 79.8
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 7.8e-196 687.2 412 79.1
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 3.0e-195 685.3 412 79.1
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 8.7e-195 683.7 409 80.4
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 1.9e-194 682.6 405 79.8
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 2.5e-194 682.2 405 78.8
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 4.3e-194 681.4 405 80.7
CSS0021848 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 4.3e-194 681.4 406 79.3
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.1e-193 679.1 412 77.9
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 8.1e-193 677.2 408 77.5
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 2.4e-192 675.6 434 74.0
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 3.1e-192 675.2 405 78.8
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 5.3e-192 674.5 405 78.8
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 5.8e-191 671.0 405 78.8
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 5.8e-191 671.0 412 77.7
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 7.6e-191 670.6 412 77.7
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.7e-190 669.5 412 77.4
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 3.8e-190 668.3 412 76.0
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 1.1e-189 666.8 405 76.0
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 1.1e-189 666.8 408 77.5
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 1.4e-189 666.4 405 79.3
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 4.2e-189 664.8 405 77.3
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 5.4e-189 664.5 409 74.8
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 5.4e-189 664.5 405 76.8
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 1.3e-187 659.8 412 74.5
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 1.7e-187 659.4 412 74.0
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 3.0e-187 658.7 412 76.0
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 3.9e-187 658.3 406 77.3
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 6.6e-187 657.5 405 77.5
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.9e-186 656.0 412 75.0
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 2.5e-186 655.6 407 77.9
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 3.3e-186 655.2 406 78.1
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 4.3e-186 654.8 405 76.5
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 1.6e-185 652.9 405 76.5
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 1.6e-185 652.9 405 75.6
Lj6C749G7 Lonicera japonica HOM05D003668 ORTHO05D004242 4.8e-185 651.4 403 77.9
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 6.2e-185 651.0 405 75.6
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 2.4e-184 649.0 426 72.3
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 6.9e-184 647.5 412 73.3
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 2.0e-183 646.0 405 75.3
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 4.5e-183 644.8 405 74.6
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 5.8e-183 644.4 413 72.6
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 9.9e-183 643.7 405 74.1
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 1.7e-182 642.9 405 75.3
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 2.2e-182 642.5 405 75.1
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 2.9e-182 642.1 412 73.8
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 6.4e-182 641.0 405 74.3
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 6.4e-182 641.0 413 73.6
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 8.4e-182 640.6 412 71.8
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 1.9e-181 639.4 404 74.0
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 4.2e-181 638.3 426 71.6
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 6.0e-180 634.4 405 73.3
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 6.0e-180 634.4 405 73.6
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 7.9e-180 634.0 405 72.8
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 1.3e-179 633.3 405 73.1
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 1.8e-179 632.9 405 73.1
Nitab4.5_0000414g0090 Nicotiana tabacum HOM05D003668 ORTHO05D004242 1.9e-178 629.4 396 73.5
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 1.6e-177 626.3 411 74.7
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 2.1e-177 625.9 481 64.2
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 2.8e-177 625.5 406 73.4
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 6.2e-177 624.4 405 72.8
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 3.1e-176 622.1 410 72.0
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 5.8e-175 617.8 406 73.9
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 7.6e-175 617.5 419 70.6
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 1.0e-174 617.1 405 71.9
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 1.0e-174 617.1 486 64.2
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.2e-174 615.9 413 70.0
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 8.4e-174 614.0 405 71.4
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 1.9e-173 612.8 515 61.9
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 1.0e-171 607.1 414 70.3
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 1.0e-171 607.1 408 70.3
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 3.0e-171 605.5 412 70.1
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 7.4e-170 600.9 409 70.2
CSS0003505 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 7.4e-170 600.9 353 81.9
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 9.6e-170 600.5 409 70.4
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 9.6e-170 600.5 412 70.4
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 2.4e-168 595.9 409 69.7
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 2.4e-168 595.9 413 69.5
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 4.1e-168 595.1 407 68.6
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 2.0e-167 592.8 407 69.8
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 3.4e-167 592.0 407 69.8
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 7.6e-167 590.9 414 70.3
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 1.7e-166 589.7 408 70.1
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 2.2e-166 589.3 410 68.8
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 5.0e-166 588.2 407 68.8
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 5.0e-166 588.2 407 68.8
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 6.5e-166 587.8 416 68.8
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 8.4e-166 587.4 414 68.6
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 5.5e-165 584.7 408 67.4
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 7.1e-165 584.3 412 69.2
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 2.1e-164 582.8 406 68.0
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 6.1e-164 581.3 430 66.3
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 1.0e-163 580.5 416 67.3
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 1.3e-163 580.1 406 68.5
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.8e-163 579.7 407 70.0
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 2.3e-163 579.3 409 68.2
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 3.0e-163 578.9 416 70.2
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 1.5e-162 576.6 406 68.0
CARHR143800 Cardamine hirsuta HOM05D003668 ORTHO05D004242 5.7e-162 574.7 400 69.8
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 3.7e-161 572.0 410 67.1
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 6.3e-161 571.2 436 62.8
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 1.1e-160 570.5 410 67.6
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.4e-160 570.1 405 67.2
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 5.9e-159 564.7 450 60.4
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 1.0e-158 563.9 419 65.9
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 1.0e-158 563.9 408 65.9
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 1.0e-158 563.9 405 68.1
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 2.2e-158 562.8 409 66.0
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 8.5e-158 560.8 409 65.8
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 1.4e-157 560.1 408 65.4
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 2.5e-157 559.3 411 63.5
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 5.5e-157 558.1 400 66.0
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 2.7e-156 555.8 406 66.7
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 3.6e-156 555.4 409 65.0
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 3.6e-156 555.4 406 66.0
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 7.9e-156 554.3 408 65.2
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 3.9e-155 552.0 408 65.2
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 1.1e-154 550.4 406 65.3
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 2.5e-154 549.3 408 65.2
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 9.7e-154 547.4 408 65.2
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-153 547.0 408 65.2
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 4.5e-151 538.5 407 65.6
BraA09t41536Z Brassica rapa HOM05D003668 ORTHO05D004242 2.2e-150 536.2 402 64.4
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 8.8e-147 524.2 406 63.3
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 1.5e-146 523.5 410 60.7
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 6.3e-145 518.1 408 62.5
Nitab4.5_0001648g0080 Nicotiana tabacum HOM05D003668 ORTHO05D004242 4.4e-138 495.4 317 72.6
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 1.0e-126 457.6 325 66.2
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 2.7e-124 449.5 339 65.5
ECA233G5938 Erigeron canadensis HOM05D003668 ORTHO05D004242 3.3e-117 426.0 392 56.4
Dinv09244 Davidia involucrata HOM05D003668 ORTHO05D004242 2.1e-108 396.7 193 98.4
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 1.5e-106 390.6 323 57.0
C07p31700 Brassica napus HOM05D003668 ORTHO05D004242 1.5e-101 374.0 293 61.4
BolC7t43709H Brassica oleracea HOM05D003668 ORTHO05D004242 3.4e-98 362.8 286 60.8
SMO092G0001 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 3.7e-97 359.4 410 45.9
Hma1.2p1_0114F.1_g055240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 7.6e-90 335.1 195 82.6
SMO351G0322 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 2.5e-85 320.1 408 42.6
Mapoly0013s0166 Marchantia polymorpha HOM05D003668 ORTHO05D004242 4.0e-83 312.8 417 39.6
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 4.4e-82 309.3 198 72.7
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 7.8e-79 298.5 407 38.8
unitig_27.g25262 Utricularia gibba HOM05D003668 ORTHO05D004242 3.1e-67 260.0 342 40.4
Pp3c21_14060 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.3e-62 244.6 409 35.9
CBR_g58693 Chara braunii HOM05D003668 ORTHO05D004242 5.8e-58 229.2 344 36.9
Pp3c19_11370 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.4e-56 224.6 350 36.6
Pp3c1_7010 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.8e-54 217.6 350 36.6
Hma1.2p1_0114F.1_g055230 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 2.7e-47 193.7 123 74.0
Eucgr.B02885 Eucalyptus grandis HOM05D003668 ORTHO05D004242 6.9e-43 179.1 116 70.7
vmacro01048 Vaccinium macrocarpon HOM05D001299 ORTHO05D004242 3.4e-42 176.8 164 57.9
MCO15G061 Micromonas commoda HOM05D003668 ORTHO05D004242 3.2e-40 170.2 359 31.2
Glyma.20G135000 Glycine max HOM05D003668 ORTHO05D004242 5.5e-40 169.5 117 67.5
Lalb_Chr21g0308531 Lupinus albus HOM05D003668 ORTHO05D004242 9.7e-37 158.7 184 47.8
SHI16328 Sapria himalayana HOM05D003668 ORTHO05D004242 2.2e-36 157.5 108 65.7
Cre04.g230928 Chlamydomonas reinhardtii HOM05D003668 ORTHO05D004242 4.1e-35 153.3 391 29.4
HPP92_020123 Vanilla planifolia HOM05D003668 ORTHO05D004242 5.9e-34 149.4 330 33.6
SEGI_30172 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 7.7e-34 149.1 124 54.0
COL.COLO4_20445 Corchorus olitorius HOM05D003668 ORTHO05D004242 5.0e-33 146.4 137 59.9
QL01p002329 Quercus lobata HOM05D000125 ORTHO05D000120 1.9e-32 144.4 137 56.2
Hma1.2p1_0114F.1_g055270 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 7.9e-31 139.0 78 83.3
PRCOL_00000170 Prasinoderma coloniale HOM05D003668 ORTHO05D004242 1.4e-30 138.3 295 33.9
RcHm_v2.0_Chr3g0491751 Rosa chinensis HOM05D003668 ORTHO05D004242 6.7e-30 136.0 81 75.3
Hma1.2p1_2887F.1_g329930 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 7.7e-26 122.5 63 85.7
Psat0s3028g0080 Pisum sativum HOM05D003668 ORTHO05D004242 2.3e-22 110.9 67 70.1
CSS0012755 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 4.4e-21 106.7 63 74.6
Medtr1g108520 Medicago truncatula HOM05D003668 ORTHO05D004242 2.8e-20 104.0 150 42.7
SHI16330 Sapria himalayana HOM05D003668 ORTHO05D004242 3.7e-20 103.6 79 65.8
HanXRQChr02g0056061 Helianthus annuus HOM05D003668 ORTHO05D221127 2.9e-17 94.0 133 42.9
SEGI_01615 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 5.0e-17 93.2 68 58.8
SHI16331 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-15 88.6 51 72.5
Medtr0121s0090 Medicago truncatula HOM05D003668 ORTHO05D004242 1.6e-15 88.2 82 56.1
Nn6g35717 Nelumbo nucifera HOM05D003668 ORTHO05D004242 2.4e-11 74.3 47 68.1
Os05g0552500 Oryza sativa ssp. japonica HOM05D003668 ORTHO05D004242 3.5e-10 70.5 47 61.7


User provided reference genes

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