Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.6e-183 646.0 328 100.0
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.4e-131 471.5 285 85.6
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.2e-125 453.8 304 78.3
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.5e-125 453.4 298 79.5
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.9e-124 448.4 297 79.8
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.0e-121 440.7 325 74.2
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.3e-121 439.5 295 78.0
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 3.0e-121 439.1 297 75.1
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 3.0e-121 439.1 302 76.8
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 3.0e-121 439.1 305 77.7
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.3e-120 435.3 301 76.4
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 4.3e-120 435.3 304 76.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 9.5e-120 434.1 296 76.7
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.6e-119 433.3 296 77.7
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.7e-119 431.8 311 73.6
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 4.7e-119 431.8 311 73.6
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 8.1e-119 431.0 301 75.7
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 8.1e-119 431.0 301 76.1
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 8.1e-119 431.0 296 76.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 1.1e-118 430.6 300 74.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.4e-118 430.3 305 75.4
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.1e-118 429.1 301 75.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 5.2e-118 428.3 279 78.9
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-118 427.9 269 81.8
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.4e-117 425.6 276 78.6
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 5.8e-117 424.9 299 76.3
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.9e-116 422.5 275 78.2
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.4e-116 421.4 257 82.5
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.1e-115 420.6 331 68.9
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 1.4e-115 420.2 248 85.5
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.4e-115 419.5 259 83.4
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 3.2e-115 419.1 258 81.4
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 3.2e-115 419.1 287 76.3
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 7.1e-115 417.9 315 72.7
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 7.1e-115 417.9 301 73.1
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.2e-114 417.2 312 71.2
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.2e-114 417.2 301 75.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.6e-114 416.8 293 74.4
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.6e-114 416.8 291 74.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.1e-114 416.4 299 72.9
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 2.1e-114 416.4 285 75.8
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.5e-114 415.6 301 73.4
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 3.5e-114 415.6 305 73.1
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 6.0e-114 414.8 272 79.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 7.8e-114 414.5 285 75.1
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 3.0e-113 412.5 267 80.1
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.0e-113 412.5 284 75.0
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.9e-113 412.1 299 72.2
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 6.6e-113 411.4 299 72.6
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.6e-113 411.4 299 72.6
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.1e-112 410.6 314 70.1
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.9e-112 409.8 297 72.7
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.5e-112 409.5 299 72.2
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 9.5e-112 407.5 303 71.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.6e-111 406.8 296 69.3
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.2e-111 404.8 304 72.7
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.1e-111 404.4 295 72.2
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.1e-110 404.1 281 73.0
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-110 404.1 309 69.6
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.3e-110 402.9 276 73.6
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 3.1e-110 402.5 296 68.9
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 4.0e-110 402.1 302 67.5
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 8.9e-110 401.0 306 68.0
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 8.9e-110 401.0 306 68.0
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.0e-109 399.8 298 70.8
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.4e-109 399.1 271 74.5
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 7.6e-109 397.9 298 71.1
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 9.9e-109 397.5 281 71.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.3e-108 397.1 296 67.2
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.7e-108 396.7 300 68.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.7e-108 396.7 300 68.0
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.9e-108 396.0 276 71.7
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.9e-108 396.0 276 71.7
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.9e-108 396.0 298 68.5
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 6.4e-108 394.8 267 74.5
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 8.4e-108 394.4 304 68.4
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 8.4e-108 394.4 316 67.7
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.1e-107 394.0 269 74.0
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-107 394.0 299 68.2
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.1e-107 394.0 274 73.0
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.4e-107 393.7 273 74.0
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.9e-107 393.3 304 68.1
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.9e-107 393.3 294 70.4
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.9e-107 393.3 276 72.8
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.2e-107 392.5 317 67.5
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 7.1e-107 391.3 287 71.4
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.2e-106 390.6 281 72.6
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.6e-106 390.2 303 67.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 2.1e-106 389.8 307 69.7
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 7.8e-106 387.9 288 71.9
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 7.8e-106 387.9 288 71.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.9e-105 385.6 290 70.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 5.1e-105 385.2 275 71.6
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.1e-104 384.0 267 74.5
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.8e-103 379.4 272 74.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.1e-102 377.5 294 68.7
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 5.2e-102 375.2 308 69.5
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 6.8e-102 374.8 251 77.7
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.2e-101 374.0 293 66.6
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.5e-101 373.6 294 69.4
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 3.4e-101 372.5 301 67.8
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 4.4e-101 372.1 310 64.8
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 5.8e-101 371.7 293 65.9
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 7.6e-101 371.3 262 72.9
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.4e-99 367.1 274 70.1
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 5.4e-99 365.2 235 74.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 9.3e-99 364.4 235 75.7
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.0e-98 361.7 249 77.1
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.5e-96 356.3 300 67.3
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 6.2e-95 351.7 267 68.2
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 4.0e-94 349.0 295 62.7
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 6.9e-94 348.2 317 61.2
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 9.0e-94 347.8 271 66.8
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 6.6e-89 331.6 256 66.8
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.3e-87 327.4 255 63.9
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.1e-83 314.3 297 58.2
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.1e-83 314.3 238 67.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.9e-83 313.5 280 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.1e-80 304.3 258 61.2
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 8.1e-79 298.1 268 56.7
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.6e-77 291.6 296 53.4
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.3e-75 284.6 191 78.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 2.1e-74 283.5 300 52.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 6.0e-74 282.0 257 55.6
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.0e-73 281.2 231 67.5
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.3e-73 280.8 271 56.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.5e-72 276.6 177 80.2
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 5.7e-72 275.4 281 54.8
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 4.6e-66 255.8 142 89.4
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 5.7e-64 248.8 213 59.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 4.8e-63 245.7 142 83.8
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 8.2e-63 245.0 142 85.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 7.9e-58 228.4 253 52.2
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.9e-57 226.1 182 67.0
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.3e-54 215.7 127 85.0
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.2e-51 206.5 159 68.6
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.7e-50 203.4 114 88.6
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.9e-49 199.5 272 44.5
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.8e-49 198.4 225 53.3
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-45 187.6 156 64.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 9.4e-43 178.3 242 45.9
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.9e-35 154.1 239 40.6
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 6.8e-33 145.6 255 38.0
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.1e-30 136.7 84 77.4
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.9e-27 127.5 129 53.5
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 6.1e-26 122.5 82 72.0
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 3.0e-25 120.2 159 49.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 2.0e-24 117.5 86 67.4
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-23 114.8 60 88.3
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 4.9e-23 112.8 184 38.0
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.0e-20 105.1 72 70.8
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 8.6e-20 102.1 196 40.3
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 5.2e-17 92.8 62 72.6
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 2.0e-16 90.9 270 28.1
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 4.4e-16 89.7 135 45.2
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.3e-15 88.2 50 86.0
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 1.7e-15 87.8 168 32.7
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.7e-15 86.7 154 30.5
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.0e-12 78.6 142 29.6
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 5.0e-12 76.3 167 26.9
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 1.9e-11 74.3 155 38.7
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 8.9e-09 65.5 142 28.2
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.6e-08 63.9 156 28.8
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-06 58.2 37 75.7
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-06 58.2 37 75.7
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 1.9e-06 57.8 165 25.5
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 5.4e-06 56.2 165 26.7
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 5.4e-06 56.2 167 25.1
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 9.2e-06 55.5 184 25.0
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 9.2e-06 55.5 133 33.8


User provided reference genes

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