Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1733.4 840 100.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1468.0 832 85.6
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1457.2 841 82.9
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1446.4 836 83.7
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1441.4 837 82.2
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1435.6 832 84.5
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1423.7 838 81.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1417.5 828 81.5
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1416.0 839 80.3
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1400.2 831 81.2
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1399.4 832 81.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1394.8 834 79.6
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1392.5 835 80.0
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1392.5 829 80.5
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1389.8 835 80.5
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1389.0 841 80.0
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1388.6 835 79.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1387.5 831 79.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1385.9 968 71.5
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1385.9 832 79.9
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1385.5 832 80.6
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1379.4 831 79.9
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1379.0 832 79.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1375.9 832 79.1
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1375.5 829 79.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1373.6 832 79.7
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1371.3 829 79.1
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1369.4 841 79.0
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1369.0 840 79.0
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1367.4 787 84.4
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1365.1 825 79.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1361.7 831 77.3
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1354.7 840 79.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1352.8 834 78.3
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1352.0 836 78.5
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1352.0 836 77.6
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1347.0 827 77.6
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1345.5 832 77.5
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1344.3 830 77.8
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1343.9 832 77.9
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1343.6 832 78.1
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1341.6 838 77.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1341.3 832 78.0
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1340.5 832 77.9
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1339.7 836 76.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1338.6 834 77.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1337.8 832 78.1
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1332.8 838 77.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1332.4 833 76.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1332.4 836 76.6
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1332.0 836 76.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1329.7 836 76.2
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1325.8 842 75.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1324.7 836 76.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1323.1 842 75.8
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1323.1 838 76.0
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1323.1 834 76.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1317.0 836 75.6
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1314.7 835 75.1
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1314.3 836 76.3
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 840 75.2
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1309.3 842 75.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1305.8 842 74.9
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1302.3 836 76.6
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1300.8 732 85.0
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1298.1 874 72.4
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1295.4 836 74.5
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1292.7 834 75.5
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1292.7 836 74.4
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1277.7 850 72.2
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1277.3 829 73.2
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1268.8 849 73.1
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1268.1 838 73.5
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1253.8 837 73.0
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1251.5 939 67.2
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1250.0 856 71.7
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1224.5 836 70.7
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1207.6 833 69.3
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1203.3 836 69.7
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1202.6 836 69.4
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1202.2 833 69.6
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1201.4 837 69.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1199.5 834 69.5
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1199.1 832 69.8
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1197.2 759 75.6
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1194.9 833 69.4
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1193.7 832 69.6
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1190.6 833 69.4
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1189.5 833 69.5
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1183.3 836 69.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1181.8 837 68.8
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1167.9 835 67.5
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1146.0 846 66.1
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1146.0 838 64.6
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 835 65.7
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1125.5 831 64.9
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.3e-311 1072.0 666 76.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 5.7e-310 1067.4 828 62.8
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 5.5e-297 1024.2 833 62.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.3e-295 1018.8 639 77.8
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.7e-294 1014.2 582 83.3
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 3.2e-252 875.5 855 51.2
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 4.6e-251 871.7 899 50.3
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.7e-248 861.7 853 52.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 6.2e-224 781.6 829 51.1
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.2e-189 666.8 462 71.4
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.6e-182 644.0 400 75.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 9.5e-156 555.1 402 67.9
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.0e-141 508.4 365 66.6
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.1e-138 498.4 355 65.4
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.5e-137 494.6 263 87.5
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.7e-117 425.6 236 86.9
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 5.4e-111 406.4 831 35.1
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.0e-109 402.1 483 47.4
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.5e-108 397.5 300 70.3
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 3.8e-104 383.6 193 94.3
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 8.7e-101 372.5 868 31.0
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.7e-101 372.5 302 59.3
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.6e-97 360.9 195 83.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.4e-97 360.5 1173 26.4
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 6.5e-96 356.3 245 75.1
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.6e-94 350.1 267 64.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 5.3e-90 336.7 192 82.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 5.9e-89 333.2 787 30.7
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 2.2e-72 278.1 564 35.1
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 8.0e-54 216.5 195 53.8
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 7.2e-47 193.4 216 45.4
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 7.2e-47 193.4 216 45.4
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.1e-46 191.8 161 60.9
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.3e-43 182.6 98 87.8
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 9.2e-42 176.4 129 69.8
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.9e-41 173.7 97 83.5
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.3e-40 172.6 101 76.2
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.9e-33 147.1 76 89.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.7e-32 145.6 84 83.3
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.0e-25 122.1 182 40.7
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 6.0e-25 120.6 68 80.9
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.5e-23 115.9 69 79.7
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-22 112.8 59 78.0
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-22 112.8 64 81.2
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.1e-22 112.1 53 88.7
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.2e-20 106.3 102 47.1
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.0e-20 105.5 110 50.9
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 7.1e-18 97.1 92 55.4
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.6e-17 95.9 109 46.8
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.1e-15 89.7 59 62.7
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 3.3e-15 88.2 140 40.0
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.4e-13 82.8 107 44.9
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 4.1e-10 71.2 86 47.7
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 1.0e-08 66.6 146 29.5
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 1.9e-07 62.4 139 24.5
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 3.3e-07 61.6 31 93.5
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 4.3e-07 61.2 319 21.3
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 2.1e-06 58.9 144 29.2
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 2.8e-06 58.5 172 26.7
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 3.6e-06 58.2 115 32.2
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 3.6e-06 58.2 118 29.7
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 4.7e-06 57.8 144 28.5
Medtr2g014020 Medicago truncatula HOM05D000836 ORTHO05D000709 8.1e-06 57.0 144 27.8


User provided reference genes

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