Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.7e-271 938.7 470 100.0
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 4.0e-204 714.9 464 76.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 5.4e-201 704.5 472 73.9
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 6.0e-200 701.0 459 74.9
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.0e-199 700.3 454 76.4
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.9e-198 696.0 451 76.1
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 4.3e-198 694.9 467 74.9
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 5.2e-196 688.0 451 74.1
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 9.9e-195 683.7 452 73.0
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 4.9e-194 681.4 452 74.8
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 2.4e-193 679.1 452 73.2
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.2e-192 676.8 454 73.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.7e-191 672.9 450 74.7
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.3e-191 672.5 453 73.1
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 8.7e-191 670.6 450 74.2
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 3.3e-190 668.7 452 73.7
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.4e-187 658.3 450 72.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 5.8e-187 657.9 467 71.1
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.7e-186 656.4 471 69.6
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 4.9e-186 654.8 452 71.2
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 6.4e-186 654.4 453 73.1
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 8.4e-186 654.1 452 71.2
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.4e-185 653.3 453 70.6
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 7.1e-185 651.0 450 72.0
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.1e-184 649.4 450 71.8
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 3.5e-184 648.7 450 72.0
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 3.0e-183 645.6 450 71.1
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.9e-182 642.9 451 71.0
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.4e-180 636.7 465 68.6
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.8e-180 636.3 450 70.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.4e-179 632.1 451 70.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 7.6e-179 630.9 480 67.1
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 2.9e-178 629.0 452 68.6
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 3.8e-178 628.6 451 69.2
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 4.9e-178 628.2 451 69.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.6e-176 623.2 453 66.7
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.6e-176 621.7 451 68.1
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.0e-175 620.5 453 67.5
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.8e-175 619.8 458 68.8
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 8.7e-175 617.5 450 66.7
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-174 615.9 487 65.7
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 5.6e-174 614.8 451 67.6
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.1e-173 612.8 450 67.3
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.8e-173 611.7 450 68.4
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 6.2e-173 611.3 450 66.7
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 6.2e-173 611.3 450 66.2
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 8.1e-173 610.9 451 68.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-172 610.5 476 66.4
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.4e-172 610.1 449 66.1
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 3.1e-172 609.0 453 65.6
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 6.9e-172 607.8 451 67.4
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 9.0e-172 607.4 450 67.3
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 9.0e-172 607.4 449 66.8
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.5e-171 606.7 450 66.7
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.0e-171 606.3 462 67.1
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.0e-171 606.3 450 66.4
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 4.9e-170 601.7 451 67.0
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.1e-169 600.5 450 66.0
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.1e-169 600.5 458 65.9
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 7.9e-168 594.3 453 66.2
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.3e-167 593.6 450 66.4
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 1.9e-166 589.7 450 65.1
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 3.3e-166 589.0 457 66.7
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 3.3e-166 589.0 452 64.6
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 7.4e-166 587.8 450 65.3
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.3e-165 587.0 468 63.5
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.1e-164 583.9 458 64.2
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.1e-164 582.4 509 58.7
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.2e-162 576.2 450 64.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 2.7e-160 569.3 448 64.5
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 5.1e-159 565.1 450 62.7
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 8.7e-159 564.3 411 67.9
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.8e-157 559.3 465 61.7
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 3.7e-157 558.9 453 64.5
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-156 557.4 515 59.0
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.5e-155 553.5 396 69.2
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 4.5e-155 552.0 452 60.8
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.3e-154 550.4 399 66.2
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 8.8e-151 537.7 477 59.7
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.6e-147 526.2 452 59.1
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 2.7e-144 516.2 451 58.5
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.3e-143 513.1 387 66.4
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 3.9e-143 512.3 450 58.0
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.1e-142 510.8 451 57.9
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.3e-142 509.2 453 58.5
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.7e-141 506.9 451 57.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 3.5e-139 499.2 356 68.8
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 7.7e-139 498.0 453 57.4
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 1.3e-138 497.3 450 56.9
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.9e-137 493.4 523 53.5
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 2.4e-132 476.5 451 55.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.4e-132 476.5 455 55.2
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.6e-131 473.8 353 67.4
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 5.9e-131 471.9 353 67.1
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 5.7e-126 455.3 450 54.2
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.5e-121 440.7 433 54.3
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.0e-111 406.4 465 47.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.8e-108 397.1 464 48.7
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 8.6e-106 388.3 459 45.8
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.8e-104 383.3 461 45.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 9.9e-86 321.6 464 41.2
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.1e-84 318.2 208 74.5
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.2e-76 290.0 212 67.9
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 4.3e-73 279.6 466 37.8
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 9.0e-71 271.9 209 63.2
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.1e-63 248.4 336 43.8
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.4e-63 247.3 213 60.6
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.7e-59 233.8 154 74.7
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.1e-58 229.6 151 73.5
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 4.3e-57 226.5 546 31.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 2.5e-49 200.7 430 32.6
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 2.1e-48 197.6 168 55.4
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.3e-45 188.3 467 29.3
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 3.2e-44 183.7 140 66.4
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.8e-42 177.9 124 72.6
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.1e-39 168.7 123 65.9
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.1e-31 142.1 100 71.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 9.7e-25 119.0 439 26.2
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.3e-21 108.6 148 41.2
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 2.8e-16 90.9 72 65.3
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.1e-15 89.0 71 64.8
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 2.0e-14 84.7 71 62.0
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 2.0e-14 84.7 71 62.0
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 5.9e-14 83.2 115 47.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 5.0e-13 80.1 56 64.3
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.5e-13 79.3 51 68.6
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.5e-12 78.6 114 42.1
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.5e-12 78.6 67 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 3.6e-11 73.9 296 26.4
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 4.7e-11 73.6 74 48.6
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 1.0e-10 72.4 273 28.2
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 5.7e-09 66.6 49 67.3
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.3e-08 65.5 89 41.6
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 2.8e-08 64.3 93 44.1
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.6e-06 58.5 51 54.9


User provided reference genes

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