Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16096 Davidia involucrata HOM05D004055 ORTHO05D004795 3.4e-65 251.5 126 100.0
Dinv15094 Davidia involucrata HOM05D004055 ORTHO05D004795 2.3e-50 202.2 118 91.5
Dinv14354 Davidia involucrata HOM05D004055 ORTHO05D004795 9.5e-44 180.3 119 82.4
Actinidia09813 Actinidia chinensis HOM05D004055 ORTHO05D004795 3.1e-34 148.7 121 67.8
Thecc.01G135000 Theobroma cacao HOM05D004055 ORTHO05D004795 7.6e-33 144.1 119 68.1
Potri.019G003900 Populus trichocarpa HOM05D004055 ORTHO05D004795 1.7e-32 142.9 113 69.9
Cpa.g.sc72.32 Carica papaya HOM05D004055 ORTHO05D004795 2.9e-32 142.1 120 65.8
CiPaw.03G129400 Carya illinoinensis HOM05D004055 ORTHO05D004795 1.4e-31 139.8 120 66.7
Gohir.D04G014600 Gossypium hirsutum HOM05D004055 ORTHO05D004795 3.2e-31 138.7 100 72.0
Gorai.012G017100 Gossypium raimondii HOM05D004055 ORTHO05D004795 3.2e-31 138.7 100 72.0
Sabra19G0021600 Salix brachista HOM05D004055 ORTHO05D004795 4.1e-31 138.3 113 69.0
Duzib264G0984 Durio zibethinus HOM05D004055 ORTHO05D004795 5.4e-31 137.9 119 66.4
TWI31G0449 Tripterygium wilfordii HOM05D004055 ORTHO05D004795 5.4e-31 137.9 106 74.5
TWI79G0735 Tripterygium wilfordii HOM05D004055 ORTHO05D004795 9.2e-31 137.1 102 74.5
Manes.13G082000 Manihot esculenta HOM05D004055 ORTHO05D004795 1.2e-30 136.7 123 66.7
Sabra19G0004100 Salix brachista HOM05D004055 ORTHO05D004795 1.2e-30 136.7 113 67.3
VMungo1309G1914 Vigna mungo HOM05D004055 ORTHO05D004795 1.2e-30 136.7 126 62.7
Gohir.A05G401200 Gossypium hirsutum HOM05D004055 ORTHO05D004795 1.6e-30 136.3 100 71.0
Atru.chr4.588 Acer truncatum HOM05D004055 ORTHO05D004795 2.7e-30 135.6 94 78.7
Manes.12G149500 Manihot esculenta HOM05D004055 ORTHO05D004795 2.7e-30 135.6 121 66.9
Potri.001G307600 Populus trichocarpa HOM05D004055 ORTHO05D004795 3.5e-30 135.2 113 65.5
COL.COLO4_21459 Corchorus olitorius HOM05D004055 ORTHO05D004795 2.3e-29 132.5 113 64.6
CiPaw.04G087200 Carya illinoinensis HOM05D004055 ORTHO05D004795 3.0e-29 132.1 121 66.1
ClCG01G015720 Citrullus lanatus HOM05D004055 ORTHO05D004795 3.9e-29 131.7 121 63.6
Glyma.04G216700 Glycine max HOM05D004055 ORTHO05D004795 3.9e-29 131.7 126 59.5
MELO3C008024.2 Cucumis melo HOM05D004055 ORTHO05D004795 5.1e-29 131.3 121 63.6
Duzib114G0632 Durio zibethinus HOM05D004055 ORTHO05D004795 5.1e-29 131.3 113 65.5
Phvul.009G146900 Phaseolus vulgaris HOM05D004055 ORTHO05D004795 6.6e-29 131.0 127 59.8
Sabra16G0193500 Salix brachista HOM05D004055 ORTHO05D004795 6.6e-29 131.0 111 64.0
Sed0016858 Sechium edule HOM05D004055 ORTHO05D004795 6.6e-29 131.0 121 62.8
Thecc.10G166300 Theobroma cacao HOM05D004055 ORTHO05D004795 8.6e-29 130.6 113 63.7
Glyma.06G149200 Glycine max HOM05D004055 ORTHO05D004795 1.1e-28 130.2 126 60.3
Ciclev10025964m.g Citrus clementina HOM05D004055 ORTHO05D004795 1.9e-28 129.4 112 64.3
Duzib114G0672 Durio zibethinus HOM05D004055 ORTHO05D004795 1.9e-28 129.4 113 64.6
TAR625G1530 Trochodendron aralioides HOM05D004055 ORTHO05D004795 2.5e-28 129.0 128 61.7
Duzib128G0998 Durio zibethinus HOM05D004055 ORTHO05D004795 3.3e-28 128.6 113 63.7
Gohir.A06G175700 Gossypium hirsutum HOM05D004055 ORTHO05D004795 4.3e-28 128.3 99 67.7
Gohir.D06G185400 Gossypium hirsutum HOM05D004055 ORTHO05D004795 4.3e-28 128.3 99 67.7
Gorai.010G216800 Gossypium raimondii HOM05D004055 ORTHO05D004795 4.3e-28 128.3 99 67.7
Eucgr.I00261 Eucalyptus grandis HOM05D004055 ORTHO05D004795 7.3e-28 127.5 114 64.9
arahy.Tifrunner.gnm1.ann1.F10EXU Arachis hypogaea HOM05D004055 ORTHO05D004795 1.2e-27 126.7 143 54.5
CsaV3_6G042000 Cucumis sativus L. HOM05D004055 ORTHO05D004795 1.2e-27 126.7 121 62.0
HanXRQChr15g0495911 Helianthus annuus HOM05D004055 ORTHO05D004795 2.1e-27 125.9 118 57.6
Lalb_Chr08g0238691 Lupinus albus HOM05D004055 ORTHO05D004795 2.1e-27 125.9 92 71.7
arahy.Tifrunner.gnm1.ann1.W5F641 Arachis hypogaea HOM05D004055 ORTHO05D004795 4.7e-27 124.8 79 79.7
Haze_25105 Corylus avellana HOM05D004055 ORTHO05D004795 6.2e-27 124.4 98 67.3
TAR381G1437 Trochodendron aralioides HOM05D004055 ORTHO05D004795 6.2e-27 124.4 130 60.8
Nn5g27192 Nelumbo nucifera HOM05D004055 ORTHO05D004795 1.1e-26 123.6 128 60.2
PGR119G1730 Punica granatum HOM05D004055 ORTHO05D004795 1.1e-26 123.6 107 67.3
COL.COLO4_35774 Corchorus olitorius HOM05D004055 ORTHO05D004795 1.8e-26 122.9 113 59.3
Lj4A857G22 Lonicera japonica HOM05D004055 ORTHO05D004795 2.4e-26 122.5 125 60.8
Lalb_Chr11g0068211 Lupinus albus HOM05D004055 ORTHO05D004795 2.4e-26 122.5 91 70.3
DCAR_001415 Daucus carota HOM05D004055 ORTHO05D004795 5.2e-26 121.3 101 67.3
Lj1g0026829 Lotus japonicus HOM05D004055 ORTHO05D004795 1.2e-25 120.2 111 58.6
CSS0019507 Camellia sinensis var. sinensis HOM05D004055 ORTHO05D004795 2.6e-25 119.0 135 56.3
Gohir.D05G282900 Gossypium hirsutum HOM05D004055 ORTHO05D004795 4.4e-25 118.2 113 60.2
Gorai.009G296400 Gossypium raimondii HOM05D004055 ORTHO05D004795 4.4e-25 118.2 113 60.2
Gohir.A05G280900 Gossypium hirsutum HOM05D004055 ORTHO05D004795 9.9e-25 117.1 113 59.3
unitig_736.g22361 Utricularia gibba HOM05D004055 ORTHO05D004795 9.9e-25 117.1 119 58.0
Glyma.08G146000 Glycine max HOM05D004055 ORTHO05D004795 1.3e-24 116.7 79 77.2
unitig_899.g14991 Utricularia gibba HOM05D004055 ORTHO05D004795 1.3e-24 116.7 123 59.3
MSTRG.23289 Avicennia marina HOM05D004055 ORTHO05D004795 1.7e-24 116.3 77 75.3
CANSAT01G3086 Cannabis sativa HOM05D004055 ORTHO05D004795 1.7e-24 116.3 89 68.5
Lsat_1_v5_gn_4_139020 Lactuca sativa HOM05D004055 ORTHO05D004795 2.9e-24 115.5 125 52.8
QL06p030904 Quercus lobata HOM05D004055 ORTHO05D004795 3.8e-24 115.2 81 71.6
Lj4g0015873 Lotus japonicus HOM05D004055 ORTHO05D004795 6.4e-24 114.4 88 69.3
THA.LOC104818468 Tarenaya hassleriana HOM05D004055 ORTHO05D004795 1.4e-23 113.2 77 76.6
Lalb_Chr23g0272481 Lupinus albus HOM05D004055 ORTHO05D004795 1.9e-23 112.8 97 63.9
Sed0022459 Sechium edule HOM05D004055 ORTHO05D004795 3.2e-23 112.1 118 56.8
GSVIVG01026619001 Vitis vinifera HOM05D004055 ORTHO05D004795 3.2e-23 112.1 88 70.5
Migut.H02472 Erythranthe guttata HOM05D004055 ORTHO05D004795 4.2e-23 111.7 77 74.0
Migut.L00046 Erythranthe guttata HOM05D004055 ORTHO05D004795 5.4e-23 111.3 90 67.8
arahy.Tifrunner.gnm1.ann1.WFL6TQ Arachis hypogaea HOM05D004055 ORTHO05D004795 7.1e-23 110.9 80 70.0
HanXRQChr09g0259611 Helianthus annuus HOM05D004055 ORTHO05D004795 7.1e-23 110.9 78 67.9
Hma1.2p1_0282F.1_g113380 Hydrangea macrophylla HOM05D004055 ORTHO05D004795 7.1e-23 110.9 90 71.1
Lsat_1_v5_gn_5_40301 Lactuca sativa HOM05D004055 ORTHO05D004795 7.1e-23 110.9 71 76.1
Dinv41077 Davidia involucrata HOM05D004055 ORTHO05D004795 9.3e-23 110.5 125 53.6
SGA_v2.0_scaffold2G01257 Striga asiatica HOM05D004055 ORTHO05D004795 9.3e-23 110.5 108 56.5
TPR.G18732 Trifolium pratense HOM05D004055 ORTHO05D004795 9.3e-23 110.5 124 52.4
arahy.Tifrunner.gnm1.ann1.GWIQ86 Arachis hypogaea HOM05D004055 ORTHO05D004795 1.2e-22 110.2 80 68.8
Medtr3g095380 Medicago truncatula HOM05D004055 ORTHO05D004795 1.2e-22 110.2 124 55.6
SGA_v2.0_scaffold47G17681 Striga asiatica HOM05D004055 ORTHO05D004795 2.1e-22 109.4 94 63.8
Oeu037779.1 Olea europaea HOM05D004055 ORTHO05D004795 2.7e-22 109.0 74 73.0
PSO541G1884 Papaver somniferum HOM05D004055 ORTHO05D004795 2.7e-22 109.0 107 57.0
THA.LOC104799385 Tarenaya hassleriana HOM05D004055 ORTHO05D004795 2.7e-22 109.0 73 75.3
VMungo0251G0876 Vigna mungo HOM05D004055 ORTHO05D004795 4.6e-22 108.2 75 73.3
Oeu047640.3 Olea europaea HOM05D004055 ORTHO05D004795 7.8e-22 107.5 74 73.0
C03p04740 Brassica napus HOM05D004055 ORTHO05D004795 1.0e-21 107.1 78 69.2
BolC3t13008H Brassica oleracea HOM05D004055 ORTHO05D004795 1.0e-21 107.1 78 69.2
GSVIVG01034541001 Vitis vinifera HOM05D004055 ORTHO05D004795 1.0e-21 107.1 120 55.0
Glyma.05G187800 Glycine max HOM05D004055 ORTHO05D004795 1.3e-21 106.7 79 70.9
CAN.G516.3 Capsicum annuum HOM05D004055 ORTHO05D004795 1.7e-21 106.3 73 72.6
PSO675G8047 Papaver somniferum HOM05D004055 ORTHO05D004795 2.3e-21 105.9 112 54.5
Nitab4.5_0001582g0050 Nicotiana tabacum HOM05D004055 ORTHO05D004795 3.9e-21 105.1 74 73.0
Nitab4.5_0004021g0040 Nicotiana tabacum HOM05D004055 ORTHO05D004795 3.9e-21 105.1 74 73.0
Prupe.6G180300 Prunus persica HOM05D004055 ORTHO05D004795 3.9e-21 105.1 123 55.3
SalBow8G2113 Salvia bowleyana HOM05D004055 ORTHO05D004795 3.9e-21 105.1 105 57.1
Phvul.002G268700 Phaseolus vulgaris HOM05D004055 ORTHO05D004795 5.1e-21 104.8 75 72.0
Sc16g0004020 Simmondsia chinensis HOM05D004055 ORTHO05D004795 6.6e-21 104.4 90 64.4
A03p04290 Brassica napus HOM05D004055 ORTHO05D004795 1.1e-20 103.6 74 70.3
BraA03t09773Z Brassica rapa HOM05D004055 ORTHO05D004795 1.1e-20 103.6 74 70.3
MBI17_g17030_MAGBIO Magnolia biondii HOM05D004055 ORTHO05D004795 4.3e-20 101.7 106 56.6
SalBow5G2387 Salvia bowleyana HOM05D004055 ORTHO05D004795 4.3e-20 101.7 71 73.2
Lalb_Chr12g0203361 Lupinus albus HOM05D004055 ORTHO05D004795 5.6e-20 101.3 72 69.4
FAN28G2172 Fragaria x ananassa HOM05D004055 ORTHO05D004795 7.3e-20 100.9 91 62.6
EL10Ac6g15243 Beta vulgaris HOM05D004055 ORTHO05D004795 1.3e-19 100.1 64 81.2
AUR62003632 Chenopodium quinoa HOM05D004055 ORTHO05D004795 1.6e-19 99.8 112 55.4
ECA246G2063 Erigeron canadensis HOM05D004055 ORTHO05D004795 2.1e-19 99.4 75 68.0
FAN26G2960 Fragaria x ananassa HOM05D004055 ORTHO05D004795 2.1e-19 99.4 94 61.7
Aqoxy6G00380 Aquilegia oxysepala HOM05D004055 ORTHO05D004795 4.8e-19 98.2 128 50.8
Lj2A578T13 Lonicera japonica HOM05D004055 ORTHO05D004795 1.4e-18 96.7 61 80.3
Lj2A588T35 Lonicera japonica HOM05D004055 ORTHO05D004795 1.4e-18 96.7 61 80.3
ATR0820G131 Amborella trichopoda HOM05D004055 ORTHO05D004795 1.8e-18 96.3 143 46.2
Psat5g064600 Pisum sativum HOM05D004055 ORTHO05D004795 1.8e-18 96.3 74 64.9
HPP92_004417 Vanilla planifolia HOM05D004055 ORTHO05D004795 2.4e-18 95.9 64 76.6
BcaB08g37176 Brassica carinata HOM05D004055 ORTHO05D004795 3.1e-18 95.5 73 68.5
Cc07_g17540 Coffea canephora HOM05D004055 ORTHO05D004795 9.0e-18 94.0 75 64.0
MD01G1024900 Malus domestica HOM05D004055 ORTHO05D004795 9.0e-18 94.0 75 68.0
C09p67670 Brassica napus HOM05D004055 ORTHO05D004795 1.5e-17 93.2 73 67.1
CDE02G4766 Ceratophyllum demersum HOM05D004055 ORTHO05D004795 1.5e-17 93.2 101 50.5
MD15G1319400 Malus domestica HOM05D004055 ORTHO05D004795 1.5e-17 93.2 92 60.9
Peaxi162Scf00599g00035 Petunia axillaris HOM05D004055 ORTHO05D004795 1.5e-17 93.2 65 70.8
CDE08G1219 Ceratophyllum demersum HOM05D004055 ORTHO05D004795 2.0e-17 92.8 101 51.5
FAN19G0550 Fragaria x ananassa HOM05D004055 ORTHO05D004795 2.6e-17 92.4 98 58.2
A10p27610 Brassica napus HOM05D004055 ORTHO05D004795 3.4e-17 92.0 73 65.8
BraA10t44812Z Brassica rapa HOM05D004055 ORTHO05D004795 3.4e-17 92.0 73 65.8
Os12g0165700 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 3.4e-17 92.0 81 65.4
Hund03496 Selenicereus undatus HOM05D004055 ORTHO05D004795 3.4e-17 92.0 59 79.7
Solyc11g005450.3 Solanum lycopersicum HOM05D004055 ORTHO05D004795 3.4e-17 92.0 73 64.4
Sopen11g001460 Solanum pennellii HOM05D004055 ORTHO05D004795 3.4e-17 92.0 73 64.4
PGSC0003DMG400003992 Solanum tuberosum HOM05D004055 ORTHO05D004795 3.4e-17 92.0 73 64.4
BolC9t59529H Brassica oleracea HOM05D004055 ORTHO05D004795 4.4e-17 91.7 73 67.1
FvH4_1g23670 Fragaria vesca HOM05D004055 ORTHO05D004795 4.4e-17 91.7 97 57.7
FAN23G0659 Fragaria x ananassa HOM05D004055 ORTHO05D004795 7.6e-17 90.9 97 57.7
RcHm_v2.0_Chr2g0119271 Rosa chinensis HOM05D004055 ORTHO05D004795 1.3e-16 90.1 102 54.9
Nitab4.5_0023764g0010 Nicotiana tabacum HOM05D004055 ORTHO05D004795 1.7e-16 89.7 68 67.6
Carub.0006s0827 Capsella rubella HOM05D004055 ORTHO05D004795 3.8e-16 88.6 77 59.7
Lalb_Chr13g0296401 Lupinus albus HOM05D004055 ORTHO05D004795 4.9e-16 88.2 79 62.0
Oeu011950.2 Olea europaea HOM05D004055 ORTHO05D004795 6.4e-16 87.8 64 73.4
Os11g0166800 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 1.9e-15 86.3 59 74.6
CAN.G869.1 Capsicum annuum HOM05D004055 ORTHO05D004795 4.2e-15 85.1 64 68.8
AL6G20260 Arabidopsis lyrata HOM05D004055 ORTHO05D004795 7.1e-15 84.3 77 57.1
MSTRG.1089 Avicennia marina HOM05D004055 ORTHO05D004795 7.1e-15 84.3 59 72.9
AT5G09850 Arabidopsis thaliana HOM05D004055 ORTHO05D004795 1.6e-14 83.2 77 55.8
Solyc04g071520.3 Solanum lycopersicum HOM05D004055 ORTHO05D004795 2.1e-14 82.8 99 50.5
AUR62017941 Chenopodium quinoa HOM05D004055 ORTHO05D004795 2.7e-14 82.4 92 55.4
Thhalv10013991m.g Eutrema salsugineum HOM05D004055 ORTHO05D004795 6.0e-14 81.3 77 55.8
Sopen04g027490 Solanum pennellii HOM05D004055 ORTHO05D004795 2.3e-13 79.3 100 48.0
PGSC0003DMG400024089 Solanum tuberosum HOM05D004055 ORTHO05D004795 2.3e-13 79.3 78 56.4
SGA_v2.0_scaffold48G18001 Striga asiatica HOM05D004055 ORTHO05D004795 2.3e-13 79.3 61 63.9
Sp6g33560 Schrenkiella parvula HOM05D004055 ORTHO05D004795 3.9e-13 78.6 77 54.5
Aa31LG3G17270 Aethionema arabicum HOM05D004055 ORTHO05D004795 5.1e-13 78.2 73 56.2
CARHR203540 Cardamine hirsuta HOM05D004055 ORTHO05D004795 8.7e-13 77.4 77 51.9
Zm00001eb202520 Zea mays HOM05D004055 ORTHO05D004795 1.9e-12 76.3 63 61.9
CiPaw.12G052600 Carya illinoinensis HOM05D004055 ORTHO05D004795 1.2e-09 67.0 51 68.6
Os12g0582600 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 1.2e-09 67.0 46 71.7
Dinv05444 Davidia involucrata HOM05D035185 ORTHO05D182451 1.4e-07 60.1 35 85.7
Pp3c6_10210 Physcomitrium patens HOM05D002493 ORTHO05D003175 2.4e-07 59.3 91 44.0
CANSAT35G0805 Cannabis sativa HOM05D004055 ORTHO05D004795 2.1e-06 56.2 32 87.5
SEGI_11259 Sequoiadendron giganteum HOM05D002493 ORTHO05D003175 3.5e-06 55.5 127 31.5
PGR042G0425 Punica granatum HOM05D002493 ORTHO05D003175 6.0e-06 54.7 110 39.1
Peaxi162Scf00003g05036 Petunia axillaris HOM05D002493 ORTHO05D003175 7.9e-06 54.3 59 47.5
SMO361G0101 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 7.9e-06 54.3 70 32.9


User provided reference genes

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