Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 4.3e-172 609.4 859 100.0
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 9.6e-87 325.9 609 87.0
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 1.2e-73 282.3 604 72.5
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.9e-63 248.4 619 83.0
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.8e-62 244.6 618 82.5
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.7e-62 244.2 202 61.4
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 4.0e-61 240.7 203 59.6
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 7.6e-60 236.5 203 58.6
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.3e-59 235.7 203 58.6
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.7e-59 235.3 204 60.3
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.2e-59 235.0 202 58.9
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.6e-57 228.8 617 56.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.7e-57 228.0 618 80.1
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 4.3e-55 220.7 201 54.7
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.1e-53 216.1 204 54.9
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.1e-53 216.1 573 55.7
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.4e-53 215.7 204 55.4
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 1.2e-52 212.6 207 54.1
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 3.8e-51 207.6 203 53.7
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.4e-50 205.7 201 54.2
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 2.1e-49 201.8 214 54.7
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 3.5e-49 201.1 202 51.0
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 6.1e-49 200.3 175 58.9
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 7.9e-49 199.9 203 52.2
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 8.7e-48 196.4 175 57.7
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.1e-47 196.1 193 56.5
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.3e-46 192.6 203 49.8
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 6.3e-46 190.3 196 50.0
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.4e-45 189.1 187 55.1
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.8e-45 188.7 202 49.5
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.0e-44 185.3 187 54.0
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.4e-44 184.5 175 56.6
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.7e-44 183.3 187 54.0
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 7.7e-44 183.3 198 51.0
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 2.2e-43 181.8 201 49.8
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 5.0e-43 180.6 143 63.6
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 6.5e-43 180.3 202 48.5
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 6.5e-43 180.3 145 60.0
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.1e-42 179.5 227 47.1
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 3.2e-42 177.9 134 61.2
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 9.4e-42 176.4 198 47.0
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 9.4e-42 176.4 161 55.3
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.0e-40 172.9 226 46.5
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.0e-40 172.9 176 47.2
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.7e-40 170.2 196 47.4
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.3e-38 166.0 196 46.9
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.3e-38 166.0 201 44.8
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 2.8e-38 164.9 183 46.4
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 4.8e-38 164.1 177 51.4
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 6.9e-37 160.2 218 44.5
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.2e-36 159.5 183 44.8
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 5.9e-36 157.1 208 42.8
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.3e-35 156.0 199 46.7
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.1e-34 152.9 197 43.7
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.4e-34 152.5 200 43.5
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.9e-34 152.1 212 42.5
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.5e-34 151.8 200 43.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 3.2e-34 151.4 159 49.1
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 4.2e-34 151.0 228 39.9
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 7.2e-34 150.2 168 47.6
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 9.4e-34 149.8 142 50.0
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 9.4e-34 149.8 168 47.6
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.1e-33 148.7 212 42.9
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 2.1e-33 148.7 183 45.4
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.7e-33 148.3 141 52.5
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.0e-32 146.4 206 39.3
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 3.9e-32 144.4 136 51.5
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 5.1e-32 144.1 143 53.1
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 8.8e-32 143.3 132 52.3
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.1e-31 142.9 165 42.4
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 2.0e-31 142.1 188 39.4
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.0e-31 142.1 210 41.0
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.7e-30 139.0 183 43.7
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.8e-30 138.3 180 43.9
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 2.8e-30 138.3 180 45.0
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 4.8e-30 137.5 180 43.9
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 6.3e-30 137.1 208 38.9
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.4e-29 136.0 192 40.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.4e-29 136.0 96 66.7
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.8e-29 135.6 138 47.1
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 5.3e-29 134.0 142 51.4
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 9.1e-29 133.3 174 44.3
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.2e-28 132.9 187 43.3
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 1.6e-28 132.5 141 44.7
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 3.5e-28 131.3 158 46.2
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 3.5e-28 131.3 194 38.7
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 4.5e-28 131.0 137 50.4
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 5.9e-28 130.6 194 40.2
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 7.7e-28 130.2 138 46.4
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 2.2e-27 128.6 140 47.9
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 6.5e-27 127.1 145 44.1
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.5e-26 125.9 143 47.6
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 2.5e-26 125.2 167 40.7
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 2.5e-26 125.2 182 39.0
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 7.2e-26 123.6 112 54.5
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 3.6e-25 121.3 174 39.7
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 3.0e-24 118.2 217 34.6
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 3.0e-24 118.2 143 43.4
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 6.7e-24 117.1 205 37.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.1e-23 116.3 181 38.7
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.6e-23 115.2 201 37.8
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 7.5e-23 113.6 142 42.3
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.7e-22 112.5 136 40.4
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 4.8e-22 110.9 204 35.3
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 6.3e-22 110.5 202 37.6
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 8.2e-22 110.2 150 38.0
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.4e-21 109.4 87 63.2
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 4.1e-21 107.8 176 37.5
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.3e-21 107.5 152 38.8
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.7e-20 105.1 91 57.1
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 5.9e-20 104.0 134 42.5
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 1.7e-19 102.4 201 35.3
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 3.8e-19 101.3 172 34.3
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 6.5e-19 100.5 146 34.9
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 6.5e-19 100.5 148 38.5
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-17 96.3 94 48.9
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 1.6e-17 95.9 136 36.8
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.4e-16 92.8 88 55.7
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.4e-16 92.8 91 48.4
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-16 92.8 172 34.9
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 4.4e-15 87.8 179 33.5
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 5.7e-15 87.4 92 46.7
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 9.8e-15 86.7 173 34.7
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 1.7e-14 85.9 120 40.0
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 3.7e-14 84.7 174 34.5
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 6.3e-14 84.0 174 33.9
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 6.3e-14 84.0 174 33.9
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 6.3e-14 84.0 174 33.9
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 8.3e-14 83.6 166 33.7
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 4.1e-13 81.3 180 33.9
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.0e-12 79.0 87 47.1
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 2.2e-11 75.5 180 32.2
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 6.5e-11 73.9 146 31.5
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 8.5e-11 73.6 71 53.5
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 8.5e-11 73.6 140 33.6
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 9.5e-10 70.1 137 32.8
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 1.2e-09 69.7 90 38.9
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 1.2e-09 69.7 59 55.9
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 1.2e-09 69.7 141 27.0
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.6e-09 69.3 90 41.1
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 4.7e-09 67.8 133 30.8
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 6.1e-09 67.4 164 26.2
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 8.0e-09 67.0 136 27.2
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 8.0e-09 67.0 155 27.1
Lalb_Chr13g0293071 Lupinus albus HOM05D007496 ORTHO05D009479 1.0e-08 66.6 203 26.1
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 1.4e-08 66.2 140 30.0
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 1.8e-08 65.9 134 27.6
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.3e-08 65.5 136 28.7
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 4.0e-08 64.7 137 29.2
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 5.2e-08 64.3 89 36.0
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 5.2e-08 64.3 143 26.6
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 6.8e-08 63.9 83 42.2
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 8.8e-08 63.5 159 28.9
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 8.8e-08 63.5 140 27.1
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 1.2e-07 63.2 141 29.8
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 1.2e-07 63.2 141 29.8
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 1.5e-07 62.8 141 29.8
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 2.6e-07 62.0 145 29.0
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.6e-07 62.0 135 25.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 3.4e-07 61.6 138 29.0
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 3.4e-07 61.6 136 28.7
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 3.4e-07 61.6 168 23.8
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 5.7e-07 60.8 145 29.7
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 5.7e-07 60.8 159 30.2
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 5.7e-07 60.8 159 25.8
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 7.5e-07 60.5 161 29.2
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 7.5e-07 60.5 101 37.6
SEGI_23973 Sequoiadendron giganteum HOM05D007063 ORTHO05D008822 9.8e-07 60.1 138 27.5
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 9.8e-07 60.1 145 29.7
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 1.3e-06 59.7 133 30.1
SEGI_14415 Sequoiadendron giganteum HOM05D006931 ORTHO05D009509 1.3e-06 59.7 138 26.8
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 1.7e-06 59.3 119 26.1
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 1.7e-06 59.3 86 39.5
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 1.7e-06 59.3 76 42.1
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 1.7e-06 59.3 131 32.1
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 2.2e-06 58.9 141 27.0
Sabra10G0070900 Salix brachista HOM05D007496 ORTHO05D009479 2.2e-06 58.9 147 32.0
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 2.2e-06 58.9 135 30.4
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 2.8e-06 58.5 143 30.1
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 2.8e-06 58.5 74 41.9
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 3.7e-06 58.2 100 35.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 4.9e-06 57.8 121 24.8
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 4.9e-06 57.8 158 27.8
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 6.3e-06 57.4 119 28.6
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 8.3e-06 57.0 153 29.4


User provided reference genes

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