Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 6.3e-70 267.3 135 100.0
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.1e-29 131.0 131 58.0
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 6.0e-28 127.9 131 57.3
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.0e-27 127.1 131 55.0
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.0e-27 125.6 131 53.4
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.8e-25 119.0 117 59.0
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 4.0e-24 115.2 116 56.9
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 9.0e-24 114.0 132 55.3
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 9.0e-24 114.0 117 56.4
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.4e-23 112.1 116 57.8
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 6.4e-22 107.8 117 56.4
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 8.4e-22 107.5 118 54.2
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 5.4e-21 104.8 124 46.8
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.6e-20 103.2 117 54.7
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.1e-20 102.8 137 48.2
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.1e-20 102.8 132 47.0
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 3.5e-20 102.1 115 53.0
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 4.6e-20 101.7 115 53.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 6.0e-20 101.3 108 56.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.0e-19 100.5 116 54.3
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.3e-19 100.1 116 53.4
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.3e-19 99.4 112 51.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 2.3e-19 99.4 116 52.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 3.0e-19 99.0 124 50.8
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 3.0e-19 99.0 116 50.0
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 6.7e-19 97.8 117 51.3
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 6.7e-19 97.8 107 51.4
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 8.7e-19 97.4 116 51.7
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.1e-18 97.1 115 51.3
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.1e-18 97.1 116 52.6
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 2.5e-18 95.9 116 47.4
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 7.4e-18 94.4 132 45.5
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 7.4e-18 94.4 121 45.5
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 9.6e-18 94.0 116 50.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 9.6e-18 94.0 115 47.8
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.3e-17 93.6 116 50.9
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.3e-17 93.6 116 50.9
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.8e-17 92.4 116 48.3
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.6e-17 92.0 116 50.0
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 6.2e-17 91.3 117 48.7
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 8.1e-17 90.9 107 46.7
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 8.1e-17 90.9 129 44.2
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.1e-16 90.5 117 52.1
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 1.1e-16 90.5 116 47.4
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.4e-16 90.1 118 52.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.8e-16 89.7 120 49.2
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.8e-16 89.7 119 48.7
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.8e-16 89.7 119 47.9
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.8e-16 89.7 117 51.3
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.4e-16 89.4 52 82.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 2.4e-16 89.4 101 54.5
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 5.3e-16 88.2 133 43.6
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.9e-16 87.8 119 47.1
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.2e-15 87.0 118 47.5
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 2.0e-15 86.3 106 47.2
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.6e-15 85.9 117 49.6
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 4.5e-15 85.1 125 43.2
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.6e-15 84.3 119 46.2
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.3e-14 83.6 121 45.5
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.3e-14 83.6 123 42.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.2e-14 82.8 118 49.2
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-14 82.8 123 42.3
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 2.2e-14 82.8 135 41.5
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 4.9e-14 81.6 128 42.2
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.1e-13 80.5 135 41.5
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 2.4e-13 79.3 133 43.6
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 3.2e-13 79.0 129 43.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 5.5e-13 78.2 105 45.7
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 7.1e-13 77.8 123 39.8
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 9.3e-13 77.4 112 47.3
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.6e-12 76.6 134 38.8
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.6e-12 76.6 119 43.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.6e-12 76.6 122 42.6
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 2.7e-12 75.9 119 47.9
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.7e-12 75.9 121 43.8
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 7.9e-12 74.3 119 40.3
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-11 73.9 128 43.0
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.0e-11 73.9 130 43.1
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.0e-11 73.9 114 44.7
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.3e-11 73.6 116 44.8
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.8e-11 73.2 119 42.0
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.8e-11 73.2 127 36.2
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 8.7e-11 70.9 102 45.1
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 8.7e-11 70.9 125 42.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 8.7e-11 70.9 66 56.1
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.1e-10 70.5 129 44.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.1e-10 70.5 81 46.9
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.1e-10 70.5 58 63.8
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 2.5e-10 69.3 44 79.5
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.3e-10 68.9 118 39.0
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 3.3e-10 68.9 64 56.2
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 4.3e-10 68.6 61 54.1
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.3e-10 68.6 58 60.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 5.6e-10 68.2 72 48.6
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 9.6e-10 67.4 49 71.4
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.3e-09 67.0 66 53.0
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.6e-09 66.6 84 46.4
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 4.8e-09 65.1 43 74.4
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 8.2e-09 64.3 121 40.5
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.4e-08 63.5 116 43.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 3.1e-08 62.4 114 39.5
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.2e-07 60.5 114 39.5
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 2.6e-07 59.3 122 33.6
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.4e-07 58.9 55 54.5
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.4e-07 58.9 49 57.1
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 3.4e-07 58.9 54 55.6
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 3.4e-07 58.9 120 37.5
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 4.5e-07 58.5 51 58.8
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 5.8e-07 58.2 56 55.4
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 5.8e-07 58.2 124 42.7
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 5.8e-07 58.2 54 57.4
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-06 57.4 69 46.4
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.3e-06 57.0 122 36.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.3e-06 57.0 116 37.1
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.2e-06 56.2 36 69.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 2.9e-06 55.8 122 35.2
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 3.8e-06 55.5 32 71.9
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.8e-06 55.5 32 71.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 3.8e-06 55.5 32 71.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 3.8e-06 55.5 118 36.4
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 3.8e-06 55.5 32 71.9
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.8e-06 55.5 32 71.9
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 3.8e-06 55.5 32 71.9
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.9e-06 55.1 43 62.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 6.5e-06 54.7 115 38.3
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 6.5e-06 54.7 54 53.7


User provided reference genes

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