Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 0.0e+00 1479.2 831 100.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-224 783.9 965 56.7
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.1e-185 654.4 866 51.5
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.5e-185 654.1 883 55.5
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 5.7e-153 545.8 922 44.1
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.7e-152 543.1 922 44.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.0e-150 537.3 902 45.6
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.5e-149 531.9 881 46.7
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 4.4e-145 519.6 881 45.1
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.1e-143 515.0 901 46.4
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.8e-130 471.1 964 40.4
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 4.4e-129 466.5 882 42.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 7.5e-129 465.7 888 42.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.2e-126 458.4 944 40.3
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.6e-126 458.0 987 40.1
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.2e-121 441.8 877 42.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.4e-121 439.9 839 43.0
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 6.6e-117 426.0 948 39.0
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 7.3e-116 422.5 956 38.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 4.7e-115 419.9 874 40.0
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.7e-112 411.4 881 39.6
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.6e-110 404.8 882 42.2
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 3.5e-110 403.7 911 39.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.2e-107 395.2 874 41.4
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.2e-107 395.2 878 41.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.6e-107 394.8 1013 38.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.7e-104 384.8 899 37.3
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 7.0e-103 379.4 940 37.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.5e-100 371.7 906 37.1
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.7e-99 366.7 887 36.8
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.0e-98 363.6 910 38.0
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.0e-97 361.3 867 37.8
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.3e-96 355.9 927 38.2
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.2e-94 352.1 918 37.0
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.0e-93 349.0 837 37.5
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 6.2e-91 339.7 923 36.8
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 8.1e-91 339.3 867 37.4
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.2e-89 335.5 934 38.2
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 2.6e-89 334.3 891 35.9
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 4.4e-89 333.6 875 37.5
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 5.8e-89 333.2 938 36.8
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 4.9e-88 330.1 910 38.9
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 4.9e-88 330.1 857 36.3
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 7.1e-87 326.2 926 34.8
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 7.1e-87 326.2 882 35.7
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 9.2e-87 325.9 903 37.5
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.3e-85 322.0 908 38.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 2.1e-83 314.7 942 34.3
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 4.7e-83 313.5 875 37.4
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 8.4e-80 302.8 903 35.2
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 3.5e-78 297.4 897 35.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.6e-78 297.0 882 34.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.3e-77 295.4 892 34.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.3e-77 295.4 877 34.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.3e-77 294.7 877 36.0
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.6e-77 293.1 873 34.7
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 8.7e-77 292.7 906 33.7
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 4.3e-76 290.4 983 33.2
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 4.8e-75 287.0 879 34.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.9e-74 283.1 887 34.9
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.5e-73 282.0 866 33.7
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 8.4e-72 276.2 855 34.6
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.1e-71 275.8 855 34.6
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.4e-71 275.4 833 33.6
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.4e-71 274.6 866 33.5
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 7.1e-71 273.1 912 33.7
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.3e-69 268.9 488 42.4
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 7.4e-68 263.1 947 32.4
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 1.3e-67 262.3 896 33.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.6e-67 261.9 922 33.4
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.6e-67 261.9 920 32.8
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 4.8e-67 260.4 909 35.2
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.8e-66 258.5 940 31.2
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.8e-66 258.5 931 33.0
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 6.9e-66 256.5 809 35.6
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 9.0e-66 256.1 926 30.9
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.2e-65 255.8 873 32.8
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.0e-65 255.0 939 31.9
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 5.8e-65 253.4 895 32.6
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 3.2e-63 247.7 952 35.4
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 7.9e-62 243.0 833 32.5
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 6.7e-61 240.0 978 32.7
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 8.7e-61 239.6 892 35.5
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 7.4e-60 236.5 836 32.3
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.5e-57 228.8 835 30.9
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 4.5e-57 227.3 994 30.8
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 5.8e-57 226.9 910 30.4
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.8e-56 224.2 853 32.5
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.6e-54 218.8 834 32.0
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 3.9e-53 214.2 908 29.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.6e-51 208.8 825 33.7
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 2.9e-48 198.0 967 29.5
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.2e-46 192.6 169 66.3
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 2.7e-46 191.4 357 43.1
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 3.9e-45 187.6 887 31.0
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 8.2e-43 179.9 849 30.4
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.8e-42 178.7 858 29.1
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.4e-42 178.3 874 29.6
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.3e-40 172.6 854 30.7
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.7e-40 172.2 896 30.5
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.6e-38 165.6 828 29.0
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 2.3e-37 161.8 857 32.2
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.3e-37 161.8 845 28.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.1e-36 159.5 925 27.8
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.5e-36 159.1 828 28.4
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.5e-36 159.1 823 28.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.0e-36 158.7 881 27.7
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 3.3e-36 157.9 833 29.3
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 3.3e-36 157.9 395 37.7
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.2e-35 153.3 926 27.6
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.5e-33 149.1 904 26.2
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 2.2e-32 145.2 318 37.1
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.1e-31 142.9 904 26.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.0e-29 136.3 908 26.2
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 3.0e-29 134.8 793 29.1
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.0e-28 132.1 829 28.7
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.3e-27 129.4 235 43.0
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 1.1e-26 126.3 860 27.3
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 5.3e-26 124.0 919 25.1
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.3e-26 124.0 876 24.8
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 7.7e-25 120.2 270 43.0
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 3.8e-24 117.9 176 52.3
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 5.0e-24 117.5 929 24.9
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 8.5e-24 116.7 898 26.2
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 2.5e-23 115.2 277 37.9
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 4.2e-23 114.4 907 26.0
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 8.8e-21 106.7 908 25.9
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 2.2e-19 102.1 313 35.5
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 2.4e-18 98.6 354 35.3
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.4e-18 98.6 159 49.1
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 3.1e-18 98.2 79 70.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.3e-16 92.8 173 40.5
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.0e-16 90.9 209 35.4
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 5.5e-15 87.4 237 36.3
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 8.0e-14 83.6 773 28.5
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.5e-12 79.3 162 46.9
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 7.5e-12 77.0 960 24.6
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 7.5e-12 77.0 65 64.6
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 7.5e-12 77.0 875 24.2
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 3.7e-11 74.7 88 59.1
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 4.8e-11 74.3 182 39.0
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 1.4e-10 72.8 175 36.6
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 5.4e-10 70.9 977 24.6
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 9.1e-10 70.1 173 35.8
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.2e-09 69.7 186 37.6
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.6e-09 69.3 215 32.6
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.7e-09 68.6 65 58.5
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 4.5e-09 67.8 82 53.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.5e-09 67.8 120 40.0
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 7.7e-09 67.0 268 27.6
Psat7g034040 Pisum sativum HOM05D000070 ORTHO05D007395 1.7e-08 65.9 133 39.8
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 2.9e-08 65.1 215 32.1
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 2.9e-08 65.1 228 34.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.8e-08 64.7 247 32.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.9e-07 62.4 74 45.9
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 2.5e-07 62.0 231 32.9
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 2.5e-07 62.0 224 31.7
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 4.2e-07 61.2 78 50.0
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 9.5e-07 60.1 776 23.2
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 2.1e-06 58.9 865 25.3
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 3.6e-06 58.2 198 30.8
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 4.7e-06 57.8 37 70.3
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 6.1e-06 57.4 819 25.0
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 6.1e-06 57.4 198 32.8
arahy.Tifrunner.gnm1.ann1.Z9P2D3 Arachis hypogaea HOM05D004628 ORTHO05D005166 8.0e-06 57.0 100 43.0


User provided reference genes

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