Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 3.7e-47 191.4 114 100.0
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 7.8e-45 183.7 123 92.7
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 6.9e-25 117.5 123 50.4
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 2.2e-23 112.5 131 51.9
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.4e-22 109.8 100 67.0
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 3.2e-22 108.6 132 47.0
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.2e-21 106.7 132 50.0
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 1.6e-21 106.3 123 45.5
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.1e-21 105.9 125 55.2
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 2.7e-21 105.5 125 47.2
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.5e-21 105.1 84 66.7
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 6.0e-21 104.4 115 49.6
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 6.0e-21 104.4 124 48.4
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.3e-20 103.2 137 43.8
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.7e-20 102.8 133 44.4
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.7e-20 102.8 133 48.1
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 2.3e-20 102.4 130 59.2
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 2.3e-20 102.4 115 51.3
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.0e-20 102.1 122 45.1
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.0e-20 102.1 122 45.1
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 3.0e-20 102.1 80 75.0
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 3.0e-20 102.1 80 62.5
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 3.0e-20 102.1 132 58.3
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.0e-20 102.1 132 42.4
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.0e-20 102.1 132 42.4
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 3.9e-20 101.7 131 58.8
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 5.1e-20 101.3 78 75.6
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 6.6e-20 100.9 132 47.7
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 6.6e-20 100.9 80 72.5
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.7e-20 100.5 93 62.4
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.1e-19 100.1 80 60.0
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.1e-19 100.1 124 56.5
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.5e-19 99.8 132 43.2
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.5e-19 99.8 132 43.2
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.5e-19 99.8 100 58.0
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.5e-19 99.8 125 49.6
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.9e-19 99.4 84 78.6
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.9e-19 99.4 130 42.3
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 2.5e-19 99.0 80 65.0
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.5e-19 99.0 132 41.7
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 3.3e-19 98.6 133 48.9
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.3e-19 98.6 122 48.4
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.3e-19 98.6 132 45.5
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 4.3e-19 98.2 132 43.9
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 5.6e-19 97.8 131 45.0
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 5.6e-19 97.8 124 58.1
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 5.6e-19 97.8 131 49.6
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 5.6e-19 97.8 80 71.2
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 5.6e-19 97.8 79 67.1
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 9.6e-19 97.1 80 67.5
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.3e-18 96.7 133 44.4
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.3e-18 96.7 80 80.0
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 2.1e-18 95.9 92 50.0
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 2.1e-18 95.9 125 54.4
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 2.8e-18 95.5 80 80.0
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.8e-18 95.5 125 52.8
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.8e-18 95.5 86 72.1
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 3.6e-18 95.1 132 53.8
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 3.6e-18 95.1 121 43.8
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 4.8e-18 94.7 80 56.2
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 4.8e-18 94.7 80 78.8
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 6.2e-18 94.4 80 56.2
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 6.2e-18 94.4 77 80.5
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 6.2e-18 94.4 80 55.0
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 6.2e-18 94.4 80 80.0
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.2e-18 94.4 121 62.0
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 8.1e-18 94.0 129 46.5
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 1.1e-17 93.6 67 68.7
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.1e-17 93.6 79 69.6
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.1e-17 93.6 124 56.5
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 1.4e-17 93.2 90 65.6
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 1.4e-17 93.2 130 55.4
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.4e-17 93.2 130 55.4
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.4e-17 93.2 130 55.4
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.8e-17 92.8 90 62.2
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 1.8e-17 92.8 132 40.2
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 2.4e-17 92.4 98 46.9
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.4e-17 92.4 78 62.8
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.4e-17 92.4 78 62.8
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 2.4e-17 92.4 78 62.8
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.4e-17 92.4 78 62.8
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.4e-17 92.4 123 46.3
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.4e-17 92.4 93 49.5
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 2.4e-17 92.4 73 79.5
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.1e-17 92.0 80 67.5
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 4.0e-17 91.7 124 54.8
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.0e-17 91.7 124 54.8
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 4.0e-17 91.7 124 50.8
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 5.3e-17 91.3 78 76.9
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 5.3e-17 91.3 92 60.9
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 5.3e-17 91.3 73 61.6
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 6.9e-17 90.9 80 61.2
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 6.9e-17 90.9 122 41.0
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.9e-17 90.9 124 54.8
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 6.9e-17 90.9 78 53.8
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 1.2e-16 90.1 124 40.3
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.5e-16 89.7 80 57.5
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 2.0e-16 89.4 124 48.4
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 2.0e-16 89.4 136 39.7
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 2.6e-16 89.0 95 51.6
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.6e-16 89.0 93 58.1
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 2.6e-16 89.0 131 45.8
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.4e-16 88.6 80 51.2
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.4e-16 88.6 80 66.2
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 4.5e-16 88.2 109 43.1
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 4.5e-16 88.2 80 66.2
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 4.5e-16 88.2 80 66.2
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 4.5e-16 88.2 81 51.9
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 5.8e-16 87.8 127 44.9
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 5.8e-16 87.8 126 53.2
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 5.8e-16 87.8 77 77.9
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 5.8e-16 87.8 92 58.7
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 7.6e-16 87.4 80 63.8
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 7.6e-16 87.4 97 55.7
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 7.6e-16 87.4 127 52.8
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 7.6e-16 87.4 133 48.1
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 9.9e-16 87.0 115 49.6
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-15 86.7 80 50.0
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 1.7e-15 86.3 97 55.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 2.2e-15 85.9 132 52.3
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 2.2e-15 85.9 73 78.1
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.9e-15 85.5 113 43.4
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.8e-15 85.1 133 50.4
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 3.8e-15 85.1 125 46.4
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 3.8e-15 85.1 80 60.0
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 6.4e-15 84.3 84 70.2
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 1.1e-14 83.6 73 60.3
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.4e-14 83.2 86 61.6
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 2.4e-14 82.4 130 50.0
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 4.2e-14 81.6 72 62.5
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 4.2e-14 81.6 107 42.1
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 4.2e-14 81.6 107 38.3
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.2e-14 81.6 87 60.9
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 5.4e-14 81.3 144 44.4
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 5.4e-14 81.3 78 69.2
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 9.3e-14 80.5 80 67.5
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 9.3e-14 80.5 80 60.0
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 9.3e-14 80.5 80 60.0
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 9.3e-14 80.5 120 47.5
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 1.2e-13 80.1 93 60.2
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.2e-13 80.1 71 67.6
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.6e-13 79.7 98 52.0
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.6e-13 79.7 98 59.2
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 2.1e-13 79.3 99 58.6
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 2.1e-13 79.3 99 58.6
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.1e-13 79.3 106 50.0
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 2.7e-13 79.0 80 63.8
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 2.7e-13 79.0 80 60.0
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 3.5e-13 78.6 126 48.4
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 4.6e-13 78.2 73 58.9
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 4.6e-13 78.2 80 58.8
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 6.0e-13 77.8 127 44.1
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 7.9e-13 77.4 80 57.5
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 7.9e-13 77.4 80 57.5
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.0e-12 77.0 126 52.4
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.0e-12 77.0 87 57.5
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.8e-12 76.3 80 63.8
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 1.8e-12 76.3 80 65.0
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.3e-12 75.9 80 60.0
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.3e-12 75.9 69 56.5
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 3.0e-12 75.5 80 63.8
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 5.1e-12 74.7 80 56.2
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 6.7e-12 74.3 69 50.7
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.1e-11 73.6 123 43.9
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.5e-11 73.2 123 43.9
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 3.3e-11 72.0 89 61.8
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.3e-11 71.6 53 71.7
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 4.3e-11 71.6 59 55.9
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.4e-11 70.9 56 73.2
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 2.1e-10 69.3 59 54.2
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 2.8e-10 68.9 123 43.1
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 3.6e-10 68.6 81 56.8
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 6.2e-10 67.8 80 53.8
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-09 67.0 81 44.4
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.4e-09 66.6 66 50.0
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 2.4e-09 65.9 106 40.6
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 3.1e-09 65.5 125 50.4
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 9.0e-09 63.9 112 37.5
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 7.6e-08 60.8 50 74.0
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.3e-06 53.9 57 47.4


User provided reference genes

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