Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 2.0e-208 728.8 353 100.0
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 7.2e-174 614.0 335 88.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.5e-168 594.7 336 83.3
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.5e-168 594.7 336 83.3
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 2.8e-162 575.5 339 80.8
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.4e-161 571.2 335 81.2
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.7e-160 568.9 335 81.5
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 7.7e-160 567.4 335 80.6
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 1.0e-159 567.0 335 81.5
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.3e-159 566.6 335 81.8
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.7e-159 566.2 335 79.7
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 8.6e-159 563.9 335 77.3
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.5e-158 563.1 335 79.7
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.2e-157 560.1 335 80.9
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.2e-157 560.1 333 81.4
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 8.0e-157 557.4 335 78.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 1.8e-156 556.2 335 77.9
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 2.0e-155 552.7 329 79.3
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.7e-155 551.2 335 77.9
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.3e-154 550.1 334 78.7
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.7e-154 549.7 335 80.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.7e-154 549.7 335 77.0
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.9e-154 548.1 335 77.3
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.4e-154 547.7 335 78.8
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 6.4e-154 547.7 335 76.7
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 6.4e-154 547.7 332 77.7
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 8.3e-154 547.4 335 78.8
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.8e-153 546.2 335 78.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.8e-153 546.2 335 77.6
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.8e-153 546.2 335 75.5
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.4e-153 545.8 335 76.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.2e-153 545.4 335 78.2
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 3.2e-153 545.4 335 76.1
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.4e-153 544.7 335 75.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 9.2e-153 543.9 335 77.0
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.2e-152 543.5 335 77.0
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.2e-152 543.5 335 76.1
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.2e-152 543.5 335 77.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 2.7e-152 542.3 336 74.7
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.5e-152 542.0 335 76.4
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.0e-151 538.9 335 75.5
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.0e-151 538.1 335 75.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 6.6e-151 537.7 329 76.9
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.1e-150 537.0 335 76.7
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.5e-150 535.8 335 75.2
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 9.5e-150 533.9 335 74.3
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 9.5e-150 533.9 335 77.0
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.2e-149 533.5 335 74.9
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.6e-149 533.1 337 74.8
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.7e-149 531.6 335 73.7
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.0e-148 530.4 335 74.3
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.4e-148 530.0 335 74.9
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.4e-148 530.0 335 74.9
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.4e-148 530.0 335 74.3
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.8e-148 529.6 335 74.3
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 4.0e-148 528.5 335 73.4
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 5.2e-148 528.1 328 76.8
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 8.9e-148 527.3 335 74.0
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.4e-147 525.4 330 74.8
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 4.4e-147 525.0 335 72.8
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.7e-146 523.1 334 74.0
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.2e-146 522.7 335 71.3
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 4.9e-146 521.5 335 71.9
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.4e-145 520.0 323 77.4
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.4e-145 519.2 334 72.8
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.4e-145 519.2 331 73.4
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 7.8e-144 514.2 334 73.7
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.0e-143 513.8 332 74.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.1e-142 510.4 334 74.0
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.5e-142 507.3 332 73.8
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 9.5e-142 507.3 338 72.5
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-141 506.9 334 72.8
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-141 506.9 334 72.8
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.6e-141 506.5 330 75.2
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.8e-141 505.8 335 71.3
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.6e-141 505.4 330 72.7
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.8e-140 503.1 337 69.1
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.3e-140 502.7 332 72.6
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 5.2e-140 501.5 310 75.5
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 6.8e-140 501.1 339 70.5
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.4e-139 498.8 333 70.9
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 5.8e-139 498.0 335 71.6
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 9.8e-139 497.3 343 70.0
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.1e-137 493.8 334 71.0
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.5e-136 488.8 328 70.7
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.7e-135 486.5 330 70.3
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 5.1e-135 485.0 334 70.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 8.6e-135 484.2 331 70.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.3e-134 482.3 335 70.4
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.3e-134 481.9 335 71.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 7.3e-134 481.1 334 69.2
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.4e-132 476.9 332 68.1
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.8e-132 476.5 329 69.9
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 2.3e-132 476.1 335 67.8
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 6.8e-132 474.6 333 69.1
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 4.9e-130 468.4 335 67.8
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 9.2e-129 464.2 335 67.2
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 8.6e-127 457.6 329 66.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 4.3e-126 455.3 328 65.5
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 6.9e-124 448.0 328 66.2
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.6e-123 446.0 334 64.4
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.2e-122 443.0 334 64.4
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 2.7e-120 436.0 328 63.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.5e-120 435.6 328 63.4
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.6e-119 431.4 334 64.4
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 8.7e-119 431.0 333 62.2
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.1e-118 430.6 320 65.6
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.5e-118 430.3 289 72.0
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.9e-118 429.9 321 67.3
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.3e-117 427.2 261 78.5
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.8e-116 423.3 333 61.6
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 5.3e-116 421.8 289 67.8
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 6.9e-116 421.4 329 62.3
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.0e-115 419.9 377 55.2
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 2.6e-115 419.5 330 60.9
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.9e-113 413.3 330 60.6
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.2e-112 410.6 332 61.1
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 6.7e-111 404.8 253 72.7
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 4.3e-110 402.1 313 62.9
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.0e-90 337.8 382 47.1
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 5.0e-90 335.5 215 78.1
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.6e-88 330.5 340 49.7
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 7.9e-88 328.2 346 51.7
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.3e-87 327.4 339 52.5
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-85 320.9 209 75.6
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.6e-85 320.5 339 49.9
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 2.2e-85 320.1 312 54.2
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.5e-81 306.6 276 56.2
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.4e-79 300.8 408 42.9
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.0e-78 297.0 279 54.5
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.8e-77 293.1 189 69.8
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 4.5e-75 285.8 250 60.4
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.5e-57 227.6 184 58.7
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.9e-57 227.3 153 69.3
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.1e-56 223.8 185 56.2
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.2e-48 198.0 367 34.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 4.7e-48 196.1 144 61.8
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 8.0e-48 195.3 328 39.0
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 7.0e-44 182.2 155 58.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 5.9e-43 179.1 134 65.7
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 3.6e-40 169.9 138 60.1
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 3.6e-40 169.9 138 60.1
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.0e-39 168.3 248 40.3
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.1e-31 141.7 91 70.3
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 3.1e-31 140.2 109 66.1
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 1.5e-30 137.9 89 73.0
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 4.4e-30 136.3 146 48.6
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 2.9e-21 107.1 410 25.9
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.1e-19 100.9 67 68.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 4.3e-17 93.2 67 65.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 5.2e-15 86.3 76 51.3
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.1e-11 74.3 39 82.1
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 2.3e-10 70.9 59 61.0
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 7.3e-09 65.9 66 48.5
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.1e-08 64.3 46 71.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 6.9e-07 59.3 34 76.5


User provided reference genes

Program Settings