Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.2e-206 721.5 349 100.0
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 6.6e-188 660.6 351 90.6
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.0e-177 623.6 354 83.6
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.0e-177 623.6 354 83.6
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.0e-173 610.9 360 81.9
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.4e-169 599.0 372 79.0
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.9e-169 597.4 355 80.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-168 596.7 347 82.4
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.0e-167 591.3 354 81.4
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 7.9e-165 583.9 364 78.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.8e-164 582.8 376 76.3
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 4.3e-163 578.2 372 76.9
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.3e-162 576.6 361 77.6
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-162 575.9 348 79.6
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.7e-162 575.1 365 78.1
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-161 573.5 348 78.7
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.1e-161 572.0 347 78.4
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.2e-160 570.1 349 77.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.6e-160 568.9 365 77.3
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.2e-159 565.8 358 76.3
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.8e-159 565.1 349 77.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 8.5e-159 563.9 375 73.9
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.4e-158 563.1 348 75.9
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.9e-158 562.8 348 75.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.5e-158 562.4 349 77.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.5e-158 562.4 348 75.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.5e-158 562.4 365 76.2
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.2e-158 561.6 351 77.5
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 4.2e-158 561.6 347 78.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 4.2e-158 561.6 360 75.8
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 7.2e-158 560.8 348 78.4
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 9.4e-158 560.5 366 76.0
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.1e-157 559.3 353 77.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 7.9e-157 557.4 361 75.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.4e-156 556.6 327 82.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.8e-156 556.2 349 77.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.8e-156 556.2 355 75.2
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.3e-156 555.8 349 77.4
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 5.1e-156 554.7 348 76.4
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 6.7e-156 554.3 350 76.3
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 6.7e-156 554.3 349 75.6
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.1e-155 553.5 361 75.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.6e-155 552.4 342 76.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 3.3e-155 552.0 347 76.1
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 5.7e-155 551.2 362 72.9
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 9.7e-155 550.4 363 76.3
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.7e-154 549.7 344 76.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 4.8e-154 548.1 346 75.7
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 5.3e-153 544.7 377 71.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.9e-153 544.3 358 75.7
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.5e-152 543.1 356 72.8
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.0e-152 542.7 349 75.1
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.0e-152 542.7 362 72.7
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.0e-152 542.7 363 71.9
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.6e-152 542.3 349 75.1
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.0e-151 540.4 349 75.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.9e-151 538.9 349 74.2
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.9e-151 538.9 343 75.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.9e-151 538.9 352 75.0
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.9e-151 538.9 355 73.0
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.8e-151 538.5 355 73.0
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.8e-151 538.5 348 73.9
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.1e-150 537.0 362 71.8
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.9e-150 536.2 371 72.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.5e-150 535.8 347 75.2
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.5e-150 535.8 355 73.0
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.2e-150 535.4 359 73.8
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 9.4e-150 533.9 359 72.1
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 9.4e-150 533.9 346 74.3
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.7e-149 531.6 359 72.1
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.7e-149 531.6 358 72.3
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 6.1e-149 531.2 359 73.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.7e-148 527.7 356 72.2
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.3e-147 525.4 349 73.6
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.7e-147 524.6 343 75.5
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.5e-144 515.4 349 71.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.7e-143 513.1 349 71.9
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 8.5e-143 510.8 349 72.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.2e-142 508.8 328 73.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 9.4e-142 507.3 349 71.6
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 8.0e-141 504.2 348 70.4
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.6e-139 499.2 355 69.6
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 4.8e-138 495.0 349 70.8
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.2e-138 494.2 374 67.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.4e-137 492.7 519 52.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.0e-137 491.1 374 65.8
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 5.9e-136 488.0 348 70.1
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.7e-136 487.6 376 64.4
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 7.7e-136 487.6 361 68.1
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 7.7e-136 487.6 364 64.6
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.2e-135 486.1 353 68.6
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.2e-135 486.1 349 69.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 3.8e-135 485.3 354 67.8
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 8.5e-135 484.2 354 69.5
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.5e-134 482.6 354 69.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 9.4e-134 480.7 354 67.8
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 9.4e-134 480.7 349 70.2
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-133 480.3 352 68.8
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.2e-133 480.3 415 59.0
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.6e-133 479.9 348 69.5
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.6e-133 479.9 354 67.5
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 4.7e-133 478.4 367 63.8
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 8.0e-133 477.6 354 68.4
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-132 477.2 354 68.1
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.0e-132 477.2 345 70.7
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 3.0e-132 475.7 354 66.7
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.0e-132 475.7 349 69.6
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.0e-132 475.7 349 69.6
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.0e-132 475.7 432 59.7
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 5.7e-131 471.5 346 71.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.7e-131 471.5 363 66.4
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.7e-130 469.9 351 67.5
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.8e-130 469.2 346 68.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 4.8e-130 468.4 346 68.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.4e-129 466.1 414 60.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.0e-128 463.0 346 67.6
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.7e-128 462.6 378 63.5
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.3e-127 460.3 362 63.8
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.0e-127 458.4 311 71.7
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.5e-126 454.9 316 71.8
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 7.2e-126 454.5 364 64.0
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.6e-125 453.4 354 66.1
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.6e-125 452.2 341 68.3
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.6e-125 452.2 355 64.8
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 5.2e-124 448.4 347 65.7
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.0e-123 446.4 349 64.8
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.4e-123 445.7 360 61.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 9.8e-123 444.1 349 66.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 8.3e-122 441.0 331 68.9
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.7e-117 425.2 328 67.4
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.0e-117 424.5 323 65.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.5e-112 409.1 364 56.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.3e-108 396.4 350 59.1
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.8e-99 365.2 240 72.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.7e-96 356.3 343 56.3
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 5.4e-89 332.0 385 48.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 6.6e-87 325.1 378 46.8
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 5.1e-79 298.9 300 57.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 9.6e-78 294.7 378 43.4
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.4e-76 290.0 224 69.6
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.5e-75 287.3 373 44.8
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.3e-74 284.3 165 78.8
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-73 280.8 221 68.3
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.2e-72 277.7 238 56.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 3.9e-71 272.7 236 66.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 3.9e-71 272.7 254 59.8
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 3.9e-71 272.7 254 59.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 8.7e-71 271.6 351 44.4
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.2e-66 256.9 409 39.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 7.1e-65 251.9 168 73.8
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.3e-63 247.7 197 65.5
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 6.0e-56 222.2 136 82.4
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 4.3e-46 189.5 128 64.8
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.4e-43 179.9 102 80.4
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-39 167.9 366 32.2
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.8e-37 160.2 345 33.6
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-35 154.1 122 61.5
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 9.1e-28 128.6 72 77.8
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.2e-19 101.7 78 67.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.6e-16 90.1 63 69.8
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.8e-08 63.9 33 75.8


User provided reference genes

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