Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 3.7e-111 404.8 194 100.0
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 3.6e-90 335.1 199 83.4
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 4.7e-82 308.1 199 75.4
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 3.7e-79 298.5 198 75.8
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 8.2e-79 297.4 198 73.7
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.5e-76 287.7 198 73.2
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 9.4e-75 283.9 190 73.7
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.6e-74 283.1 196 73.0
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.0e-73 280.4 185 71.9
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.0e-73 280.4 190 73.2
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 5.2e-73 278.1 192 70.8
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 4.4e-72 275.0 196 69.4
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 4.4e-72 275.0 191 73.3
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.4e-72 275.0 200 70.5
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 4.4e-72 275.0 193 71.0
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 7.5e-72 274.2 269 55.8
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.2e-71 272.7 203 69.5
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.2e-71 272.7 196 70.9
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.8e-71 272.3 197 67.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 3.7e-71 271.9 193 69.4
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 4.8e-71 271.6 199 68.3
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.8e-71 271.6 187 71.7
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 8.2e-71 270.8 198 69.2
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 8.2e-71 270.8 202 66.8
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.4e-70 270.0 194 69.1
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.0e-69 266.2 196 68.9
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 3.5e-69 265.4 197 68.0
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 4.5e-69 265.0 191 70.7
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.3e-68 263.5 193 69.4
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.8e-68 261.9 189 66.7
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 6.5e-68 261.2 214 63.6
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 6.5e-68 261.2 184 70.7
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.1e-67 260.4 192 68.8
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 1.9e-67 259.6 206 64.6
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 2.5e-67 259.2 190 65.3
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 2.5e-67 259.2 195 67.7
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 3.2e-67 258.8 194 68.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.2e-67 258.5 190 66.3
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 7.2e-67 257.7 195 65.6
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 9.4e-67 257.3 191 67.5
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.2e-66 256.9 193 66.8
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 1.2e-66 256.9 191 68.1
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.6e-66 256.5 190 70.0
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 6.1e-66 254.6 190 66.8
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 8.0e-66 254.2 203 64.0
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 1.8e-65 253.1 191 64.4
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.3e-65 252.7 190 65.8
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 2.3e-65 252.7 197 64.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.3e-65 252.7 196 64.8
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.0e-65 252.3 187 65.8
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.0e-65 251.9 185 68.1
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 6.8e-65 251.1 183 67.8
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 6.8e-65 251.1 183 67.8
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.8e-65 251.1 196 64.8
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 6.8e-65 251.1 195 66.2
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 8.8e-65 250.8 192 64.1
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 8.8e-65 250.8 196 65.8
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.2e-64 250.4 184 68.5
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.5e-64 250.0 211 60.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.5e-64 250.0 128 89.8
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.4e-64 248.8 183 66.7
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 4.4e-64 248.4 211 63.5
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 5.7e-64 248.1 195 63.6
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 7.5e-64 247.7 191 66.0
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 9.8e-64 247.3 137 81.8
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.3e-63 246.9 192 65.1
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.7e-63 245.4 224 59.8
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.3e-63 244.6 186 65.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 8.3e-63 244.2 223 59.6
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.1e-62 243.8 192 62.0
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 1.4e-62 243.4 182 62.1
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-62 243.4 198 65.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 5.4e-62 241.5 195 61.5
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 9.1e-62 240.7 182 61.0
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 4.5e-61 238.4 201 60.2
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 6.5e-60 234.6 123 85.4
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.1e-59 233.8 193 61.1
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.1e-59 233.8 122 86.9
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.1e-59 233.8 128 84.4
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 9.4e-59 230.7 191 61.8
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 9.4e-59 230.7 121 83.5
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.2e-58 230.3 191 57.6
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.7e-58 229.2 172 68.6
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.4e-57 226.9 255 51.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.8e-57 226.5 199 60.8
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 6.8e-57 224.6 123 82.1
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.5e-56 223.4 191 60.7
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.7e-55 218.8 195 55.4
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.9e-55 218.4 121 76.9
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.8e-54 216.5 195 54.9
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 2.4e-54 216.1 165 66.7
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.1e-54 215.3 200 58.0
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 7.0e-54 214.5 183 58.5
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.0e-52 210.7 194 57.2
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 4.3e-51 205.3 192 54.7
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 1.4e-49 200.3 163 61.3
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.8e-49 199.9 124 69.4
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 3.0e-49 199.1 253 47.4
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 3.4e-48 195.7 97 91.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.4e-48 195.3 139 66.2
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.3e-47 193.7 143 69.2
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 3.7e-47 192.2 159 65.4
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 4.9e-47 191.8 137 62.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.8e-46 189.9 113 73.5
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 3.9e-44 182.2 154 61.7
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 1.6e-42 176.8 157 57.3
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 2.3e-41 172.9 164 48.2
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.6e-40 169.5 127 65.4
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 3.7e-39 165.6 113 59.3
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.9e-39 165.2 111 65.8
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 7.8e-37 157.9 156 55.8
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.0e-36 156.0 202 46.5
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 5.0e-36 155.2 131 63.4
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 6.2e-34 148.3 125 61.6
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 9.8e-32 141.0 263 39.5
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.4e-31 138.3 100 65.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.2e-30 136.0 102 57.8
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 7.8e-29 131.3 139 51.8
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.3e-28 129.8 63 90.5
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 6.6e-28 128.3 136 41.9
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 5.6e-27 125.2 156 47.4
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.8e-26 122.9 60 85.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 4.7e-26 122.1 58 93.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.0e-24 116.7 97 46.4
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 2.0e-24 116.7 96 52.1
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 2.0e-24 116.7 106 48.1
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.9e-22 110.2 111 57.7
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.2e-22 109.4 95 48.4
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 3.6e-18 95.9 111 49.5
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.1e-17 94.4 126 36.5
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.1e-17 94.4 103 44.7
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.2e-13 80.9 42 81.0
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.7e-12 77.0 112 41.1
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 5.1e-12 75.5 112 43.8
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.9e-11 73.6 35 85.7
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 1.9e-11 73.6 35 85.7
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.9e-11 73.6 109 40.4
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 2.5e-11 73.2 91 46.2
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.6e-11 72.0 117 39.3
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 4.9e-07 58.9 29 86.2
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 6.4e-07 58.5 109 37.6
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 7.1e-06 55.1 26 88.5


User provided reference genes

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