Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 0.0e+00 1448.0 850 100.0
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 5.6e-297 1024.2 882 76.4
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.6e-235 820.1 878 62.4
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 9.7e-233 810.8 887 62.7
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 7.7e-230 801.2 887 62.2
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.5e-212 743.8 930 56.9
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 2.5e-212 743.0 946 54.3
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 5.9e-206 721.8 881 56.3
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 6.1e-203 711.8 877 60.0
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.5e-201 707.2 860 59.7
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 2.5e-196 689.9 860 58.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 3.3e-196 689.5 896 51.3
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 4.3e-196 689.1 890 54.7
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.8e-187 659.8 878 52.6
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 2.3e-181 640.2 876 54.6
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 9.5e-180 634.8 846 55.9
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 4.7e-179 632.5 877 51.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 2.6e-177 626.7 940 47.1
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.3e-176 624.4 960 49.5
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.1e-175 621.3 863 54.6
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 1.4e-175 620.9 870 53.8
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.9e-172 610.5 875 50.5
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 6.2e-171 605.5 852 55.5
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 6.8e-170 602.1 908 52.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 8.9e-170 601.7 859 52.6
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 8.9e-170 601.7 916 52.2
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 6.4e-168 595.5 860 52.4
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 4.1e-167 592.8 876 50.9
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 5.4e-167 592.4 851 54.1
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 6.0e-166 589.0 925 51.5
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.0e-165 588.2 851 53.6
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 3.0e-165 586.6 926 51.5
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 2.5e-164 583.6 1023 47.2
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.6e-161 573.5 851 53.0
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 5.8e-161 572.4 981 45.4
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.8e-160 569.7 964 45.3
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 4.9e-160 569.3 996 46.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 7.8e-158 562.0 891 49.6
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 3.3e-156 556.6 843 48.5
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.6e-155 554.3 823 49.5
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 4.8e-155 552.7 887 50.3
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 7.1e-151 538.9 886 50.2
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 2.7e-150 537.0 927 45.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 4.6e-150 536.2 820 48.8
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.1e-148 531.6 906 48.7
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 2.1e-147 527.3 824 49.8
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 8.1e-147 525.4 862 46.6
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.4e-146 524.6 835 44.3
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 5.3e-146 522.7 820 48.3
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.8e-144 516.5 938 42.1
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 8.4e-144 515.4 880 45.3
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.8e-141 507.7 466 63.1
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 5.1e-141 506.1 851 48.4
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 2.5e-140 503.8 864 46.1
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.2e-137 495.0 823 46.7
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 2.2e-136 490.7 859 48.5
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 2.1e-134 484.2 901 44.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.9e-132 477.6 822 46.1
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 3.7e-131 473.4 921 46.0
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 4.1e-130 469.9 903 45.5
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.2e-129 468.4 808 50.9
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.6e-129 467.2 793 44.4
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 3.4e-129 466.8 459 59.7
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.1e-127 461.8 866 47.0
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.8e-125 454.5 792 43.6
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 3.9e-125 453.4 856 41.9
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 6.7e-125 452.6 500 56.6
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.8e-123 447.2 883 40.7
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 8.2e-123 445.7 828 41.7
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 5.9e-121 439.5 731 43.5
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 5.0e-120 436.4 858 42.0
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.0e-117 428.7 759 46.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 8.2e-115 419.1 855 39.8
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 1.8e-114 417.9 896 42.6
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.7e-112 411.4 511 52.6
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 1.1e-108 398.7 430 56.5
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 3.8e-104 383.6 862 40.4
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.1e-103 382.1 855 40.4
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 5.5e-103 379.8 853 37.9
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.6e-102 378.3 509 48.3
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.0e-101 375.6 907 37.9
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 4.0e-101 373.6 484 49.2
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 2.8e-99 367.5 836 40.1
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 4.1e-98 363.6 898 38.3
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.6e-97 361.7 447 51.9
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 2.9e-96 357.5 824 41.6
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 5.5e-95 353.2 864 37.5
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 7.2e-95 352.8 940 35.7
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.2e-94 352.1 632 44.3
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 4.4e-92 343.6 835 39.3
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 7.5e-92 342.8 897 37.8
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 4.8e-91 340.1 697 41.3
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 2.9e-88 330.9 477 47.8
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 2.0e-81 308.1 902 34.0
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.4e-77 295.4 428 45.8
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.2e-60 239.2 551 47.5
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.1e-55 222.6 691 35.2
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.4e-53 214.9 310 58.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.2e-51 208.4 660 31.7
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.2e-51 208.4 660 31.7
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 4.9e-51 207.2 361 44.3
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.7e-40 172.2 923 26.1
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.5e-39 169.1 145 64.8
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.8e-35 154.5 437 33.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.0e-32 146.4 302 40.1
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.5e-31 141.7 186 51.1
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.1e-30 138.7 299 47.2
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 2.4e-29 135.2 294 37.4
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 8.4e-27 126.7 131 56.5
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 7.1e-26 123.6 239 42.7
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.3e-22 112.8 146 48.6
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 2.5e-18 98.6 68 70.6
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 4.2e-18 97.8 98 55.1
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.6e-17 94.4 280 31.4
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 4.3e-15 87.8 109 45.9
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.1e-10 73.2 61 67.2
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 3.2e-10 71.6 88 63.6
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.7e-09 68.6 121 40.5
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 6.7e-08 63.9 311 27.0
RcHm_v2.0_Chr4g0421911 Rosa chinensis HOM05D006481 ORTHO05D008160 2.5e-07 62.0 73 49.3
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 3.3e-07 61.6 56 55.4


User provided reference genes

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