Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.8e-249 864.8 419 100.0
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 7.9e-228 793.5 418 90.7
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 5.7e-226 787.3 418 90.0
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.3e-224 780.8 419 89.5
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.0e-223 778.9 418 89.2
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.7e-222 775.8 419 88.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.9e-221 772.3 418 89.0
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.8e-217 758.4 418 86.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.8e-217 758.4 435 84.6
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 6.5e-214 747.3 415 85.8
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.5e-213 745.3 417 86.1
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.1e-212 742.3 415 84.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.1e-212 742.3 416 85.6
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.0e-211 740.0 421 83.6
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.3e-211 738.8 414 84.3
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 3.9e-211 738.0 414 84.3
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 5.1e-211 737.6 416 83.9
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.1e-210 736.5 418 84.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.5e-210 736.1 414 84.5
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.0e-210 735.7 417 83.2
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.7e-210 734.2 416 83.2
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 7.4e-210 733.8 417 84.2
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 9.7e-210 733.4 439 81.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.7e-209 732.6 437 80.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 6.3e-209 730.7 419 83.5
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.2e-209 730.3 432 81.7
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 8.2e-209 730.3 416 83.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.1e-208 729.9 418 83.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-208 729.6 415 82.7
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.4e-208 728.8 415 82.7
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.4e-208 728.8 417 82.0
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.1e-208 728.0 417 82.5
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.1e-208 728.0 415 83.1
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 5.3e-208 727.6 419 82.8
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.9e-208 727.2 412 83.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 9.1e-208 726.9 416 82.0
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.5e-207 726.1 414 82.9
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.0e-207 725.7 417 82.0
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-207 725.3 416 81.7
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 3.4e-207 724.9 415 82.2
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.0e-206 723.4 416 82.7
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.3e-206 723.0 415 82.2
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.3e-206 723.0 417 82.7
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 2.2e-206 722.2 416 80.8
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.9e-206 721.8 416 81.2
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.8e-206 721.5 416 81.5
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 5.0e-206 721.1 416 82.7
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.0e-206 721.1 416 83.2
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 8.5e-206 720.3 419 81.6
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.5e-205 718.8 415 82.4
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 4.2e-205 718.0 417 81.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 4.2e-205 718.0 432 79.6
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 5.5e-205 717.6 419 80.9
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 5.5e-205 717.6 416 81.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 5.5e-205 717.6 411 82.5
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.5e-205 717.6 417 80.6
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 7.2e-205 717.2 417 81.5
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.2e-204 716.5 414 83.3
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.2e-204 716.5 419 81.1
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 2.7e-204 715.3 416 80.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.7e-204 715.3 414 81.9
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.6e-204 714.9 416 81.2
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 3.6e-204 714.9 411 81.0
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.9e-204 713.8 416 81.2
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 7.9e-204 713.8 414 82.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 5.2e-203 711.1 419 79.2
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 5.2e-203 711.1 418 81.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.5e-202 709.5 416 79.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.2e-201 705.7 414 81.2
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.2e-201 705.7 419 80.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.2e-201 705.7 419 80.4
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.8e-201 705.3 419 80.7
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 3.7e-201 704.9 457 74.4
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 8.2e-201 703.7 414 78.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.1e-200 703.4 417 79.9
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.4e-200 703.0 411 79.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.4e-200 702.2 416 80.0
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.1e-200 701.8 416 80.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.1e-200 701.4 416 79.3
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.3e-200 701.0 416 78.4
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.3e-200 701.0 418 82.1
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 7.0e-200 700.7 415 78.3
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.6e-199 698.7 435 78.2
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.5e-199 698.0 416 78.6
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.5e-199 698.0 419 80.0
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.0e-198 696.8 414 77.3
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.3e-198 696.4 416 78.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.7e-198 696.0 416 78.1
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.8e-198 694.9 435 77.7
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.8e-198 694.9 409 80.7
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 8.5e-198 693.7 416 77.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.5e-197 693.0 416 77.6
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 3.2e-197 691.8 411 80.0
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.2e-197 690.6 435 77.7
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.2e-197 690.6 412 77.4
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.1e-196 689.1 411 78.3
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.6e-196 688.3 417 77.9
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 78.8
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 76.9
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.8e-195 686.0 411 79.6
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.0e-195 685.3 449 73.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 3.0e-195 685.3 416 76.9
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 4.0e-195 684.9 406 81.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.2e-194 683.3 417 76.7
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.6e-194 682.2 416 76.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.5e-194 680.6 361 89.2
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.5e-194 680.6 415 78.3
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.7e-194 680.2 414 78.5
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 9.7e-194 680.2 412 78.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.7e-193 679.5 418 77.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.7e-193 679.5 498 67.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.7e-193 678.3 415 78.6
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.4e-192 676.4 416 77.6
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.0e-192 674.1 413 77.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.2e-191 673.3 417 76.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.5e-191 671.4 416 76.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.0e-190 667.9 411 75.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 4.2e-189 664.8 418 75.8
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 5.5e-189 664.5 416 77.6
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 7.2e-189 664.1 417 77.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.4e-187 659.8 417 77.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 3.0e-187 658.7 416 75.0
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.3e-185 653.3 415 73.5
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.7e-185 652.9 412 74.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.6e-183 646.4 413 72.4
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 7.7e-183 644.0 416 75.0
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.2e-182 642.5 371 81.4
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.2e-181 638.6 412 74.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.5e-178 627.5 412 74.0
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.0e-175 619.4 421 68.2
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.5e-173 613.2 363 79.1
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.8e-171 604.4 435 70.8
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 8.9e-171 604.0 361 77.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.4e-170 602.1 416 70.9
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 8.3e-169 597.4 341 82.4
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-167 593.6 341 81.2
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.4e-160 570.1 413 63.9
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 9.8e-154 547.4 417 64.3
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.4e-152 543.5 410 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.3e-149 532.3 411 60.8
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 3.1e-147 525.8 410 59.3
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.2e-140 503.8 301 80.4
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.6e-138 496.1 340 70.3
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.1e-136 490.7 429 55.9
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.6e-133 478.4 314 74.5
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-129 467.2 302 77.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.4e-120 436.4 291 73.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-113 414.1 223 86.1
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.9e-110 402.5 423 48.0
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-109 401.0 235 80.4
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 5.3e-107 392.1 502 41.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.2e-103 380.9 404 48.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.5e-101 373.2 423 46.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.1e-99 364.8 198 84.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.8e-97 359.4 198 83.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.4e-94 350.9 241 68.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.5e-82 309.3 221 68.8
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.0e-74 283.9 258 59.7
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-73 280.4 226 64.6
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 4.0e-70 269.6 174 72.4
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.4e-67 260.4 163 77.3
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.0e-65 252.7 179 69.8
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 9.5e-64 248.4 155 74.8
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-61 241.5 167 70.7
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 7.8e-58 228.8 229 53.7
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 8.6e-57 225.3 127 84.3
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.6e-56 222.6 181 61.9
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.0e-54 216.5 124 80.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.2e-52 210.7 336 39.3
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.1e-51 208.4 121 76.0
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 9.2e-51 205.3 127 77.2
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-49 200.7 342 38.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.0e-41 175.3 100 82.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.2e-39 166.0 122 62.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-31 141.4 88 76.1
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.6e-29 134.0 125 56.0
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.5e-26 123.6 71 80.3
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.3e-25 121.7 75 72.0
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.8e-20 103.6 59 84.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.6e-18 98.2 87 51.7
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 6.0e-18 96.3 87 51.7
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.3e-14 83.2 60 71.7
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 6.7e-09 66.2 58 55.2
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 7.4e-08 62.8 295 23.4
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.1e-06 58.9 37 64.9


User provided reference genes

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