Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 6.3e-54 213.8 103 100.0
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 3.3e-18 95.1 51 86.3
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 1.2e-12 76.6 51 66.7
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 5.1e-11 71.2 51 66.7
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 5.1e-11 71.2 51 66.7
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 6.6e-11 70.9 51 62.7
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 6.6e-11 70.9 51 62.7
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 8.7e-11 70.5 51 60.8
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 1.1e-10 70.1 50 66.0
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 1.5e-10 69.7 51 66.7
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 3.3e-10 68.6 51 68.6
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 4.3e-10 68.2 51 68.6
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 7.3e-10 67.4 50 66.0
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 9.6e-10 67.0 51 58.8
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 9.6e-10 67.0 51 62.7
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 2.1e-09 65.9 51 56.9
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 2.1e-09 65.9 51 60.8
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 2.8e-09 65.5 51 66.7
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 2.8e-09 65.5 48 64.6
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 3.6e-09 65.1 50 66.0
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 3.6e-09 65.1 47 61.7
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 4.8e-09 64.7 50 64.0
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 4.8e-09 64.7 50 64.0
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 4.8e-09 64.7 50 64.0
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 4.8e-09 64.7 53 62.3
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 4.8e-09 64.7 51 60.8
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 6.2e-09 64.3 51 60.8
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 8.1e-09 63.9 51 62.7
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 1.1e-08 63.5 49 63.3
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.1e-08 63.5 51 60.8
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 1.1e-08 63.5 52 61.5
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.1e-08 63.5 53 58.5
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.4e-08 63.2 51 58.8
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.8e-08 62.8 48 62.5
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 1.8e-08 62.8 52 59.6
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 1.8e-08 62.8 53 58.5
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 2.4e-08 62.4 48 62.5
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 2.4e-08 62.4 50 62.0
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 4.0e-08 61.6 51 62.7
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 4.0e-08 61.6 50 64.0
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 5.3e-08 61.2 52 57.7
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.0e-08 60.5 53 54.7
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 9.0e-08 60.5 49 63.3
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 1.2e-07 60.1 53 58.5
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 1.5e-07 59.7 51 62.7
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.5e-07 59.7 27 96.3
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 1.5e-07 59.7 51 62.7
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.5e-07 59.7 51 58.8
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 2.0e-07 59.3 34 76.5
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 2.0e-07 59.3 51 56.9
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 2.0e-07 59.3 27 96.3
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 2.6e-07 58.9 57 52.6
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 3.4e-07 58.5 55 52.7
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 3.4e-07 58.5 38 73.7
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 4.5e-07 58.2 27 92.6
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 4.5e-07 58.2 35 68.6
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 4.5e-07 58.2 27 92.6
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 5.8e-07 57.8 53 58.5
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 5.8e-07 57.8 52 55.8
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 5.8e-07 57.8 52 55.8
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 7.6e-07 57.4 43 60.5
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 7.6e-07 57.4 52 59.6
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 9.9e-07 57.0 50 50.0
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 9.9e-07 57.0 52 59.6
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 9.9e-07 57.0 52 55.8
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 9.9e-07 57.0 51 58.8
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 1.7e-06 56.2 47 59.6
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 1.7e-06 56.2 42 59.5
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 1.7e-06 56.2 42 59.5
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 1.7e-06 56.2 34 70.6
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.7e-06 56.2 49 53.1
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.7e-06 56.2 35 71.4
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 2.2e-06 55.8 43 62.8
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 2.2e-06 55.8 35 65.7
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 2.9e-06 55.5 51 60.8
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.9e-06 55.5 27 88.9
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 2.9e-06 55.5 43 62.8
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 2.9e-06 55.5 51 60.8
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 3.8e-06 55.1 27 85.2
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 3.8e-06 55.1 40 70.0
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.8e-06 55.1 40 70.0
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 3.8e-06 55.1 35 65.7
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-06 55.1 38 65.8
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 3.8e-06 55.1 49 55.1
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 4.9e-06 54.7 50 48.0
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 4.9e-06 54.7 56 50.0
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.9e-06 54.7 36 58.3
MD02G1103100 Malus domestica HOM05D005821 ORTHO05D006649 4.9e-06 54.7 45 57.8
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 6.4e-06 54.3 27 85.2
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 6.4e-06 54.3 50 50.0
MD12G1254600 Malus domestica HOM05D005821 ORTHO05D006649 6.4e-06 54.3 45 57.8
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 6.4e-06 54.3 35 60.0
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 6.4e-06 54.3 35 62.9


User provided reference genes

Program Settings