Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.8e-145 518.1 251 100.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.4e-91 340.1 242 71.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.9e-89 332.0 256 68.4
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.1e-89 331.6 246 70.7
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.6e-88 328.2 238 70.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.8e-87 325.9 234 70.5
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.9e-84 315.8 238 66.4
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.9e-84 315.8 238 66.4
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.9e-84 315.1 233 69.1
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 4.9e-84 315.1 237 67.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.7e-82 309.3 234 69.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.8e-81 306.6 240 65.0
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 5.1e-81 305.1 238 65.5
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.1e-80 303.9 235 67.2
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 4.3e-80 302.0 236 66.1
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.3e-80 302.0 245 63.3
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 2.1e-79 299.7 254 61.0
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.8e-79 299.3 236 65.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.8e-79 299.3 235 65.1
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.8e-79 298.5 236 67.8
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 8.1e-79 297.7 244 64.8
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.1e-78 297.4 237 64.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 6.9e-78 294.7 234 63.2
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.2e-77 293.9 236 66.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.2e-77 293.9 235 65.5
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 3.4e-77 292.4 235 64.3
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.0e-76 290.8 236 64.0
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-76 290.8 235 61.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.3e-76 290.4 238 62.2
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.7e-76 290.0 234 65.0
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 6.5e-76 288.1 235 62.6
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.1e-75 287.3 235 63.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.5e-75 286.2 237 61.6
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.2e-75 285.4 228 63.2
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 9.3e-75 284.3 238 62.2
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 9.3e-75 284.3 237 60.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.2e-74 283.9 235 62.6
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.6e-74 283.5 235 64.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.6e-74 283.5 235 58.7
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.7e-74 282.7 239 60.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.6e-74 282.0 237 62.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.6e-74 282.0 239 61.9
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 7.9e-74 281.2 234 60.7
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.0e-73 280.8 261 57.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.0e-73 280.8 250 59.2
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-73 280.4 197 72.1
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.3e-73 279.6 238 60.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.9e-73 278.9 186 73.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 5.1e-73 278.5 240 61.7
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.1e-72 277.3 239 61.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.1e-72 277.3 185 71.4
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.9e-72 276.6 241 62.7
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.5e-72 276.2 239 59.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.3e-71 273.9 234 60.3
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.1e-71 273.1 241 60.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.8e-71 272.7 242 58.3
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 3.7e-71 272.3 235 57.0
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.8e-70 270.0 236 60.2
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.4e-70 269.6 235 61.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.4e-70 269.6 235 61.3
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.1e-70 269.2 236 60.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.1e-70 269.2 236 61.9
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 5.3e-70 268.5 241 58.5
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 9.0e-70 267.7 238 57.6
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 9.0e-70 267.7 234 59.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.2e-69 267.3 252 56.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.5e-69 266.9 238 57.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.5e-69 266.9 241 58.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.5e-69 266.9 236 61.4
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-69 266.5 233 61.4
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.6e-69 266.2 237 56.5
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 5.8e-69 265.0 240 57.5
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 5.8e-69 265.0 180 74.4
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.6e-69 264.6 241 57.7
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.3e-68 263.8 228 58.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.3e-68 263.8 240 57.5
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.0e-68 261.9 183 72.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 8.4e-68 261.2 259 55.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.4e-68 261.2 236 61.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 9.3e-67 257.7 234 56.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.2e-66 257.3 178 69.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 7.9e-66 254.6 230 56.5
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.0e-65 252.7 162 73.5
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.7e-65 251.5 235 57.4
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-64 250.8 231 60.6
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.6e-63 246.9 230 56.1
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.7e-63 245.7 232 53.0
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 6.3e-63 245.0 172 70.9
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 8.2e-63 244.6 180 64.4
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.1e-62 244.2 234 53.4
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.6e-61 239.6 238 54.6
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.7e-60 236.9 245 54.3
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 5.5e-59 231.9 240 52.5
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.2e-58 230.7 232 50.4
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 8.8e-57 224.6 234 50.9
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.5e-56 223.0 238 48.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.7e-55 219.2 233 49.8
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.2e-55 218.0 234 47.9
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 1.4e-54 217.2 230 50.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.8e-54 216.9 176 60.8
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 4.1e-54 215.7 235 47.7
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.1e-54 215.7 174 63.8
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 4.5e-53 212.2 185 57.3
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.9e-52 209.5 194 58.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 3.8e-52 209.1 174 62.1
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 6.5e-52 208.4 234 49.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.5e-52 208.0 243 48.1
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.5e-48 197.2 316 39.6
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.3e-48 196.1 234 45.7
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 9.7e-48 194.5 191 53.4
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 4.1e-46 189.1 200 51.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-45 186.0 234 42.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 5.0e-44 182.2 118 70.3
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.9e-43 180.3 190 51.1
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 7.2e-43 178.3 200 51.5
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.6e-42 176.0 142 61.3
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.7e-39 166.0 143 57.3
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.7e-34 149.1 124 57.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 7.0e-30 135.2 101 61.4
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-29 132.9 172 42.4
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-28 129.4 171 42.1
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 5.0e-28 129.0 74 81.1
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.5e-27 125.6 178 40.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 6.1e-26 122.1 172 39.0
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.3e-25 120.2 96 57.3
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 3.4e-24 116.3 75 72.0
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.3e-23 114.4 123 50.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-20 103.6 81 64.2
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 5.0e-20 102.4 107 45.8
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.0e-17 94.7 84 56.0
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 8.6e-12 75.1 45 73.3
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.5e-11 73.6 44 75.0
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 3.3e-11 73.2 57 57.9
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 5.6e-11 72.4 48 66.7
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.3e-11 72.0 42 76.2
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-10 71.2 41 75.6
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.8e-09 67.4 51 58.8
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.2e-09 65.9 42 69.0
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 5.8e-08 62.4 42 64.3
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 1.9e-06 57.4 54 55.6


User provided reference genes

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