Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15172 Davidia involucrata HOM05D000260 ORTHO05D004405 2.2e-87 325.5 150 100.0
CSS0035427 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 3.2e-46 188.7 151 62.9
QL06p012226 Quercus lobata HOM05D000260 ORTHO05D004405 1.7e-39 166.4 150 58.0
Rhsim04G0238600 Rhododendron simsii HOM05D000260 ORTHO05D004405 2.1e-37 159.5 154 53.2
Potri.010G145400 Populus trichocarpa HOM05D000260 ORTHO05D004405 3.5e-37 158.7 142 54.9
COL.COLO4_34618 Corchorus olitorius HOM05D000260 ORTHO05D004405 7.9e-37 157.5 141 58.2
Thecc.04G300300 Theobroma cacao HOM05D000260 ORTHO05D004405 1.1e-35 153.7 142 55.6
Sabra10G0112200 Salix brachista HOM05D000260 ORTHO05D004405 2.5e-35 152.5 142 53.5
Hma1.2p1_0013F.1_g008560 Hydrangea macrophylla HOM05D000260 ORTHO05D004405 1.9e-30 136.3 92 70.7
Manes.15G004500 Manihot esculenta HOM05D000260 ORTHO05D004405 1.8e-28 129.8 136 52.2
TAR362G0285 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.6e-26 123.2 127 51.2
GSVIVG01034995001 Vitis vinifera HOM05D000260 ORTHO05D004405 3.4e-24 115.5 96 55.2
Atru.chr4.3004 Acer truncatum HOM05D007976 ORTHO05D004405 1.0e-23 114.0 146 43.2
HanXRQChr05g0146061 Helianthus annuus HOM05D000260 ORTHO05D004405 1.3e-20 103.6 150 36.0
MBI09_g25171_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D000318 3.6e-13 79.0 102 40.2
GSVIVG01008327001 Vitis vinifera HOM05D000260 ORTHO05D000318 3.0e-12 75.9 130 33.8
TAR629G0876 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.1e-11 73.9 100 40.0
MD06G1219200 Malus domestica HOM05D000260 ORTHO05D004405 1.9e-11 73.2 80 45.0
Haze_18720 Corylus avellana HOM05D000260 ORTHO05D004405 5.7e-11 71.6 80 42.5
Rhsim12G0142700 Rhododendron simsii HOM05D000260 ORTHO05D000318 7.4e-11 71.2 109 35.8
QL10p026060 Quercus lobata HOM05D000260 ORTHO05D004405 9.7e-11 70.9 147 31.3
Lalb_Chr09g0331051 Lupinus albus HOM05D000072 ORTHO05D000026 3.7e-10 68.9 130 37.7
RcHm_v2.0_Chr7g0185891 Rosa chinensis HOM05D000260 ORTHO05D004405 8.2e-10 67.8 87 41.4
arahy.Tifrunner.gnm1.ann1.HVZ2A0 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.1e-09 67.4 81 39.5
Dinv28134 Davidia involucrata HOM05D000260 ORTHO05D004405 1.1e-09 67.4 125 34.4
arahy.Tifrunner.gnm1.ann1.A5PQY8 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.8e-09 66.6 80 38.8
Lj4g0027056 Lotus japonicus HOM05D000072 ORTHO05D000026 1.8e-09 66.6 85 41.2
RcHm_v2.0_Chr7g0186021 Rosa chinensis HOM05D000260 ORTHO05D004405 1.8e-09 66.6 89 40.4
COL.COLO4_07247 Corchorus olitorius HOM05D000260 ORTHO05D004405 2.4e-09 66.2 101 37.6
MD00G1204100 Malus domestica HOM05D000260 ORTHO05D000318 2.4e-09 66.2 125 32.8
FAN18G0416 Fragaria x ananassa HOM05D000260 ORTHO05D004405 4.1e-09 65.5 99 38.4
FAN18G2567 Fragaria x ananassa HOM05D000260 ORTHO05D004405 4.1e-09 65.5 99 38.4
Cfa019742 Carpinus fangiana HOM05D000260 ORTHO05D000318 6.9e-09 64.7 80 38.8
FAN13G0627 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.9e-09 64.7 92 37.0
MD17G1247800 Malus domestica HOM05D000260 ORTHO05D000318 6.9e-09 64.7 123 31.7
FAN18G0413 Fragaria x ananassa HOM05D000260 ORTHO05D004405 9.1e-09 64.3 99 36.4
Solyc12g036320.3 Solanum lycopersicum HOM05D000260 ORTHO05D004405 1.2e-08 63.9 89 40.4
RcHm_v2.0_Chr7g0185911 Rosa chinensis HOM05D000072 ORTHO05D000026 2.0e-08 63.2 82 40.2
Sopen12g016640 Solanum pennellii HOM05D000260 ORTHO05D004405 2.0e-08 63.2 112 36.6
FvH4_5g11790 Fragaria vesca HOM05D000260 ORTHO05D004405 2.6e-08 62.8 99 37.4
Haze_18706 Corylus avellana HOM05D000260 ORTHO05D004405 3.4e-08 62.4 50 56.0
Nn3g17933 Nelumbo nucifera HOM05D000260 ORTHO05D000318 5.9e-08 61.6 85 40.0
Peaxi162Scf00683g00037 Petunia axillaris HOM05D000072 ORTHO05D000318 7.7e-08 61.2 83 41.0
CANSAT01G1855 Cannabis sativa HOM05D000072 ORTHO05D000026 1.0e-07 60.8 132 31.8
Thecc.03G039500 Theobroma cacao HOM05D000260 ORTHO05D000318 1.3e-07 60.5 100 36.0
Hund16172 Selenicereus undatus HOM05D000260 ORTHO05D000318 1.7e-07 60.1 91 33.0
Dinv01101 Davidia involucrata HOM05D000260 ORTHO05D004405 3.8e-07 58.9 93 34.4
Thecc.04G130400 Theobroma cacao HOM05D000072 ORTHO05D000026 3.8e-07 58.9 80 36.2
FAN04G2633 Fragaria x ananassa HOM05D000260 ORTHO05D004405 6.5e-07 58.2 88 38.6
AUR62023280 Chenopodium quinoa HOM05D000260 ORTHO05D000318 8.5e-07 57.8 70 37.1
Dinv00976 Davidia involucrata HOM05D000260 ORTHO05D000318 8.5e-07 57.8 145 30.3
Dinv34807 Davidia involucrata HOM05D000072 ORTHO05D000026 8.5e-07 57.8 102 34.3
Glyma.08G044300 Glycine max HOM05D000072 ORTHO05D000026 8.5e-07 57.8 135 31.1
Lalb_Chr14g0371001 Lupinus albus HOM05D000260 ORTHO05D004405 8.5e-07 57.8 94 30.9
Carub.0001s1801 Capsella rubella HOM05D000260 ORTHO05D000318 1.4e-06 57.0 145 26.9
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.4e-06 57.0 80 32.5
Thecc.03G038900 Theobroma cacao HOM05D000260 ORTHO05D004405 1.4e-06 57.0 54 48.1
TPR.G24789 Trifolium pratense HOM05D000260 ORTHO05D004405 1.4e-06 57.0 92 30.4
Ca_08086_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.9e-06 56.6 91 28.6
QL10p026197 Quercus lobata HOM05D000260 ORTHO05D004405 1.9e-06 56.6 109 29.4
SEGI_01518 Sequoiadendron giganteum HOM05D000072 ORTHO05D000026 1.9e-06 56.6 106 37.7
AL1G30800 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 2.5e-06 56.2 98 31.6
Eucgr.B00783 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.5e-06 56.2 127 33.9
RcHm_v2.0_Chr6g0273031 Rosa chinensis HOM05D000260 ORTHO05D000318 3.2e-06 55.8 80 31.2
Carub.0002s1315 Capsella rubella HOM05D000072 ORTHO05D000026 4.2e-06 55.5 85 34.1
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 4.2e-06 55.5 74 39.2
MD09G1255100 Malus domestica HOM05D000260 ORTHO05D000318 4.2e-06 55.5 81 34.6
Dinv34805 Davidia involucrata HOM05D000260 ORTHO05D000318 5.5e-06 55.1 125 26.4
Eucgr.B00782 Eucalyptus grandis HOM05D000072 ORTHO05D000026 5.5e-06 55.1 106 30.2
Potri.004G096900 Populus trichocarpa HOM05D000260 ORTHO05D000318 5.5e-06 55.1 125 28.8
HanXRQChr11g0325091 Helianthus annuus HOM05D000260 ORTHO05D000318 7.2e-06 54.7 130 31.5
Nitab4.5_0006493g0010 Nicotiana tabacum HOM05D000260 ORTHO05D000318 7.2e-06 54.7 81 37.0
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 7.2e-06 54.7 135 27.4
FAN18G4313 Fragaria x ananassa HOM05D000072 ORTHO05D000410 9.4e-06 54.3 82 39.0


User provided reference genes

Program Settings