Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.4e-51 206.1 111 100.0
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 6.6e-49 197.2 111 94.6
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 3.3e-48 194.9 111 93.7
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.1e-46 189.9 111 91.0
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.0e-46 188.0 111 90.1
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 5.2e-46 187.6 111 91.0
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 5.2e-46 187.6 111 90.1
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.2e-45 186.4 111 91.0
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.5e-45 186.0 111 89.2
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 91.0
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 91.0
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 91.0
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 2.0e-45 185.7 109 91.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.6e-45 185.3 109 91.7
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.6e-45 185.3 111 90.1
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 88.3
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.9e-45 183.3 111 88.3
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.3e-44 183.0 111 88.3
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-44 183.0 108 91.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 89.2
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 90.1
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 88.3
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 87.4
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 85.6
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 87.4
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.9e-44 181.0 112 91.1
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 6.4e-44 180.6 111 88.3
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 6.4e-44 180.6 110 91.8
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 8.4e-44 180.3 111 86.5
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 8.4e-44 180.3 111 86.5
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 8.4e-44 180.3 111 86.5
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 86.5
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 86.5
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 89.2
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 89.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 89.2
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 87.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.9e-43 179.1 112 88.4
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.9e-43 179.1 112 89.3
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 86.5
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.2e-43 178.3 109 89.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 4.2e-43 177.9 127 79.5
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 9.3e-43 176.8 111 88.3
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.2e-42 176.4 111 87.4
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 87.5
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.1e-42 175.6 111 85.6
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.1e-42 175.6 111 85.6
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.7e-42 175.3 109 89.0
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 88.3
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.7e-42 175.3 133 75.2
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 3.5e-42 174.9 112 87.5
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 3.5e-42 174.9 108 88.0
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 7.8e-42 173.7 112 86.6
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.7e-41 172.6 108 87.0
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.7e-41 172.6 109 83.5
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 84.7
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 2.3e-41 172.2 109 86.2
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 83.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 83.9
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 85.6
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 85.6
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 85.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 86.5
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 84.7
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 84.7
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 86.5
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.6e-41 170.6 112 83.0
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 85.6
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.5e-40 169.5 110 83.6
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.9e-40 169.1 111 83.8
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.9e-40 169.1 109 84.4
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.9e-40 169.1 109 87.2
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 85.7
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 83.8
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 3.3e-40 168.3 109 85.3
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 82.1
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 3.3e-40 168.3 100 88.0
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 4.3e-40 167.9 99 90.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 7.3e-40 167.2 103 84.5
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.1e-39 165.6 107 83.2
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.1e-39 165.6 109 81.7
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.8e-39 165.2 105 82.9
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.8e-39 164.5 99 89.9
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.2e-39 164.1 111 81.1
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.4e-38 162.9 109 81.7
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 2.4e-38 162.2 109 81.7
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.4e-38 162.2 109 81.7
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.4e-38 162.2 109 81.7
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.0e-37 159.1 110 81.8
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.4e-37 158.3 112 81.2
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 78.2
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 6.4e-36 154.1 108 80.6
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 111 77.5
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 75.7
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.9e-35 152.5 111 78.4
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 77.3
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 77.3
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 76.4
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 5.4e-35 151.0 110 77.3
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 7.1e-35 150.6 110 76.4
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 7.1e-35 150.6 110 76.4
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 7.1e-35 150.6 110 76.4
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 7.1e-35 150.6 110 76.4
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 7.1e-35 150.6 110 75.5
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.2e-34 149.8 111 75.7
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-34 149.8 113 77.0
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.6e-34 149.4 111 77.5
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 75.5
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 75.5
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 3.5e-34 148.3 112 72.3
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.0e-33 146.7 97 80.4
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.0e-33 146.7 111 73.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 75.5
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.0e-33 146.7 177 55.4
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.8e-33 146.0 112 74.1
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.8e-33 146.0 112 78.6
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 2.3e-33 145.6 110 74.5
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 3.9e-33 144.8 98 82.7
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 5.1e-33 144.4 111 73.9
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 8.7e-33 143.7 110 73.6
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 8.7e-33 143.7 105 72.4
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.1e-32 143.3 111 72.1
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.1e-31 137.1 111 72.1
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.2e-29 133.3 108 70.4
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.0e-29 132.5 111 71.2
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.5e-29 131.3 85 81.2
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 4.9e-28 127.9 83 85.5
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 4.2e-27 124.8 101 66.3
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 3.0e-25 118.6 111 64.0
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.8e-22 109.4 110 61.8
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 5.3e-22 107.8 62 90.3
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.5e-21 106.3 68 86.8
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 3.9e-17 91.7 60 81.7
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 3.3e-16 88.6 57 80.7
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.6e-15 86.3 92 55.4
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 4.8e-15 84.7 50 90.0
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.1e-14 83.6 110 47.3
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 5.3e-14 81.3 57 77.2
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.3e-12 76.6 62 69.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 2.2e-12 75.9 45 88.9
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 8.5e-12 73.9 62 67.7
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 2.4e-06 55.8 110 37.3


User provided reference genes

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