Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15102 Davidia involucrata HOM05D000290 ORTHO05D025262 3.3e-47 191.4 100 100.0
Dinv40946 Davidia involucrata HOM05D000290 ORTHO05D025262 2.1e-33 145.6 94 80.9
Dinv09289 Davidia involucrata HOM05D000290 ORTHO05D025262 5.4e-18 94.4 61 82.0
Atru.chr12.193 Acer truncatum HOM05D000290 ORTHO05D007356 3.2e-10 68.6 67 61.2
CANSAT56G2455 Cannabis sativa HOM05D000290 ORTHO05D007356 5.5e-10 67.8 67 58.2
Dinv34498 Davidia involucrata HOM05D000290 ORTHO05D007356 7.1e-10 67.4 67 61.2
Manes.07G142100 Manihot esculenta HOM05D000290 ORTHO05D007356 1.2e-09 66.6 62 61.3
Nitab4.5_0000171g0290 Nicotiana tabacum HOM05D000290 ORTHO05D007356 2.1e-09 65.9 96 47.9
TWI09G1541 Tripterygium wilfordii HOM05D000290 ORTHO05D007356 2.1e-09 65.9 62 62.9
Ciclev10031187m.g Citrus clementina HOM05D000290 ORTHO05D007356 4.6e-09 64.7 67 58.2
Haze_17371 Corylus avellana HOM05D000290 ORTHO05D007356 4.6e-09 64.7 81 51.9
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 6.0e-09 64.3 54 68.5
Cfa001193 Carpinus fangiana HOM05D000290 ORTHO05D007356 7.9e-09 63.9 79 51.9
HanXRQChr14g0460511 Helianthus annuus HOM05D000290 ORTHO05D007356 7.9e-09 63.9 62 59.7
Potri.019G061300 Populus trichocarpa HOM05D000290 ORTHO05D007356 7.9e-09 63.9 52 69.2
Sabra19G0075100 Salix brachista HOM05D000290 ORTHO05D007356 7.9e-09 63.9 55 63.6
TAR623G1031 Trochodendron aralioides HOM05D000290 ORTHO05D007356 7.9e-09 63.9 82 51.2
C09p71500 Brassica napus HOM05D000290 ORTHO05D007356 1.0e-08 63.5 91 44.0
GSVIVG01032656001 Vitis vinifera HOM05D000290 ORTHO05D007356 1.3e-08 63.2 52 71.2
Migut.F01231 Erythranthe guttata HOM05D000290 ORTHO05D007356 1.8e-08 62.8 50 70.0
Lj8A52T21 Lonicera japonica HOM05D000290 ORTHO05D007356 1.8e-08 62.8 67 56.7
THA.LOC104823168 Tarenaya hassleriana HOM05D000290 ORTHO05D007356 1.8e-08 62.8 67 56.7
BcaB01g05943 Brassica carinata HOM05D000290 ORTHO05D007356 2.3e-08 62.4 67 53.7
BolC3t12810H Brassica oleracea HOM05D000290 ORTHO05D007356 2.3e-08 62.4 67 53.7
FAN06G0462 Fragaria x ananassa HOM05D000290 ORTHO05D007356 2.3e-08 62.4 75 53.3
Prupe.2G265700 Prunus persica HOM05D000290 ORTHO05D007356 2.3e-08 62.4 67 55.2
PGR142G4431 Punica granatum HOM05D000290 ORTHO05D007356 2.3e-08 62.4 52 65.4
Aa31LG11G6040 Aethionema arabicum HOM05D000290 ORTHO05D007356 3.0e-08 62.0 69 52.2
COL.COLO4_19476 Corchorus olitorius HOM05D000290 ORTHO05D007356 3.0e-08 62.0 52 65.4
Duzib128G1704 Durio zibethinus HOM05D000290 ORTHO05D007356 3.0e-08 62.0 52 67.3
Oeu039386.1 Olea europaea HOM05D000290 ORTHO05D007356 3.0e-08 62.0 67 56.7
Sp6g37630 Schrenkiella parvula HOM05D000290 ORTHO05D007356 3.0e-08 62.0 67 55.2
BcaB01g05718 Brassica carinata HOM05D000290 ORTHO05D007356 3.9e-08 61.6 67 53.7
A03p02240 Brassica napus HOM05D000290 ORTHO05D007356 3.9e-08 61.6 67 53.7
BraA03t09588Z Brassica rapa HOM05D000290 ORTHO05D007356 3.9e-08 61.6 67 53.7
CAN.G1229.6 Capsicum annuum HOM05D000290 ORTHO05D007356 3.9e-08 61.6 84 50.0
Eucgr.G03148 Eucalyptus grandis HOM05D000290 ORTHO05D007356 3.9e-08 61.6 52 67.3
AUR62024948 Chenopodium quinoa HOM05D000290 ORTHO05D007356 5.1e-08 61.2 53 62.3
FvH4_7g26150 Fragaria vesca HOM05D000290 ORTHO05D007356 5.1e-08 61.2 78 46.2
FAN10G3915 Fragaria x ananassa HOM05D000290 ORTHO05D007356 5.1e-08 61.2 78 46.2
RcHm_v2.0_Chr1g0372581 Rosa chinensis HOM05D000290 ORTHO05D007356 5.1e-08 61.2 67 53.7
CARHR208040 Cardamine hirsuta HOM05D000290 ORTHO05D007356 6.7e-08 60.8 67 53.7
MELO3C020171.2 Cucumis melo HOM05D000290 ORTHO05D007356 6.7e-08 60.8 98 44.9
BcaC06g32229 Brassica carinata HOM05D000290 ORTHO05D007356 8.7e-08 60.5 67 53.7
A10p30990 Brassica napus HOM05D000290 ORTHO05D007356 8.7e-08 60.5 67 53.7
BolC9t59913H Brassica oleracea HOM05D000290 ORTHO05D007356 8.7e-08 60.5 67 53.7
BraA10t45144Z Brassica rapa HOM05D000290 ORTHO05D007356 8.7e-08 60.5 67 53.7
Cpa.g.sc19.40 Carica papaya HOM05D000290 ORTHO05D007356 8.7e-08 60.5 82 46.3
CiPaw.01G307500 Carya illinoinensis HOM05D000290 ORTHO05D007356 8.7e-08 60.5 82 46.3
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 8.7e-08 60.5 52 63.5
SalBow2G1132 Salvia bowleyana HOM05D000290 ORTHO05D025262 8.7e-08 60.5 53 62.3
ECA238G2935 Erigeron canadensis HOM05D000290 ORTHO05D007356 1.1e-07 60.1 62 54.8
Thhalv10013198m.g Eutrema salsugineum HOM05D000290 ORTHO05D007356 1.1e-07 60.1 67 53.7
FAN01G0461 Fragaria x ananassa HOM05D000290 ORTHO05D007356 1.1e-07 60.1 78 44.9
Gohir.A05G404300 Gossypium hirsutum HOM05D000290 ORTHO05D007356 1.1e-07 60.1 52 63.5
Gohir.D04G011400 Gossypium hirsutum HOM05D000290 ORTHO05D007356 1.1e-07 60.1 74 51.4
Gorai.012G013600 Gossypium raimondii HOM05D000290 ORTHO05D007356 1.1e-07 60.1 52 63.5
MD07G1235400 Malus domestica HOM05D000290 ORTHO05D007356 1.1e-07 60.1 67 53.7
Rhsim03G0153700 Rhododendron simsii HOM05D000290 ORTHO05D007356 1.1e-07 60.1 57 59.6
Sed0001960 Sechium edule HOM05D000290 ORTHO05D007356 1.1e-07 60.1 52 67.3
PGSC0003DMG400022947 Solanum tuberosum HOM05D000290 ORTHO05D007356 1.1e-07 60.1 84 47.6
HPP92_017912 Vanilla planifolia HOM05D000290 ORTHO05D007356 1.1e-07 60.1 56 60.7
QL08p065093 Quercus lobata HOM05D000290 ORTHO05D007356 1.5e-07 59.7 52 65.4
Hund13437 Selenicereus undatus HOM05D000290 ORTHO05D007356 1.9e-07 59.3 54 57.4
AT5G05200 Arabidopsis thaliana HOM05D000290 ORTHO05D007356 2.5e-07 58.9 67 52.2
EL10Ac2g02669 Beta vulgaris HOM05D000290 ORTHO05D007356 2.5e-07 58.9 63 54.0
C03p02580 Brassica napus HOM05D000290 ORTHO05D007356 2.5e-07 58.9 67 52.2
Carub.0006s0413 Capsella rubella HOM05D000290 ORTHO05D007356 2.5e-07 58.9 67 52.2
Peaxi162Scf00073g02224 Petunia axillaris HOM05D000290 ORTHO05D007356 2.5e-07 58.9 86 46.5
Solyc03g095620.4 Solanum lycopersicum HOM05D000290 ORTHO05D007356 2.5e-07 58.9 84 47.6
Sopen03g025570 Solanum pennellii HOM05D000290 ORTHO05D007356 2.5e-07 58.9 84 47.6
AL6G15040 Arabidopsis lyrata HOM05D000290 ORTHO05D007356 3.3e-07 58.5 67 50.7
CsaV3_5G011120 Cucumis sativus L. HOM05D000290 ORTHO05D007356 3.3e-07 58.5 95 45.3
MD01G1169500 Malus domestica HOM05D000290 ORTHO05D007356 3.3e-07 58.5 67 52.2
arahy.Tifrunner.gnm1.ann1.FMIL5U Arachis hypogaea HOM05D000290 ORTHO05D007356 4.3e-07 58.2 50 62.0
arahy.Tifrunner.gnm1.ann1.S15XUX Arachis hypogaea HOM05D000290 ORTHO05D007356 4.3e-07 58.2 50 62.0
ClCG07G005270 Citrullus lanatus HOM05D000290 ORTHO05D007356 5.7e-07 57.8 52 63.5
MD03G1125400 Malus domestica HOM05D000290 ORTHO05D025262 5.7e-07 57.8 67 52.2
PSO170G6016 Papaver somniferum HOM05D000290 ORTHO05D007356 5.7e-07 57.8 54 59.3
Sc10g0003060 Simmondsia chinensis HOM05D000290 ORTHO05D007356 5.7e-07 57.8 51 62.7
AUR62030591 Chenopodium quinoa HOM05D000290 ORTHO05D007356 7.4e-07 57.4 49 61.2
Duzib114G0405 Durio zibethinus HOM05D000290 ORTHO05D007356 7.4e-07 57.4 52 61.5
LjContig00408g0018075 Lotus japonicus HOM05D000290 ORTHO05D007356 7.4e-07 57.4 49 65.3
SGA_v2.0_scaffold160G37737 Striga asiatica HOM05D000290 ORTHO05D007356 7.4e-07 57.4 75 50.7
Thecc.10G185100 Theobroma cacao HOM05D000290 ORTHO05D007356 7.4e-07 57.4 75 49.3
vmacro06903 Vaccinium macrocarpon HOM05D000290 ORTHO05D007356 7.4e-07 57.4 57 56.1
Aqoxy4G03280 Aquilegia oxysepala HOM05D000290 ORTHO05D007356 9.6e-07 57.0 52 59.6
CSS0016279 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007356 9.6e-07 57.0 48 66.7
CSS0037983 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007356 9.6e-07 57.0 48 66.7
PSO017G3158 Papaver somniferum HOM05D000290 ORTHO05D007356 9.6e-07 57.0 54 57.4
Hma1.2p1_1805F.1_g303140 Hydrangea macrophylla HOM05D000290 ORTHO05D007356 1.3e-06 56.6 50 64.0
CDE04G3545 Ceratophyllum demersum HOM05D000290 ORTHO05D007356 2.1e-06 55.8 54 53.7
Ca_23242_v3 Cicer arietinum L. HOM05D000290 ORTHO05D007356 2.1e-06 55.8 49 63.3
Ah.12g064460 Amaranthus hybridus HOM05D000290 ORTHO05D007356 2.8e-06 55.5 49 59.2
Cc02_g05200 Coffea canephora HOM05D000290 ORTHO05D007356 2.8e-06 55.5 52 59.6
Nn2g10265 Nelumbo nucifera HOM05D000290 ORTHO05D007356 2.8e-06 55.5 52 63.5
ATR1127G020 Amborella trichopoda HOM05D000290 ORTHO05D007356 3.7e-06 55.1 50 62.0
Medtr5g068050 Medicago truncatula HOM05D000290 ORTHO05D007356 3.7e-06 55.1 49 61.2
TPR.G33928 Trifolium pratense HOM05D000290 ORTHO05D007356 3.7e-06 55.1 49 61.2
CDE04G3455 Ceratophyllum demersum HOM05D000290 ORTHO05D007356 4.8e-06 54.7 50 56.0
SEGI_22277 Sequoiadendron giganteum HOM05D000290 ORTHO05D007356 6.2e-06 54.3 51 56.9
Lsat_1_v5_gn_2_126721 Lactuca sativa HOM05D000290 ORTHO05D007356 8.2e-06 53.9 56 55.4
unitig_90.g27551 Utricularia gibba HOM05D000290 ORTHO05D007356 8.2e-06 53.9 50 58.0


User provided reference genes

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