Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15064 Davidia involucrata HOM05D004101 ORTHO05D181331 2.7e-89 332.0 172 100.0
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 6.7e-08 61.6 33 90.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.7e-06 57.0 35 71.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 1.7e-06 57.0 28 92.9
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 1.7e-06 57.0 28 92.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 2.8e-06 56.2 28 92.9
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 3.7e-06 55.8 28 89.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 4.8e-06 55.5 27 92.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 85.7
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 4.8e-06 55.5 28 89.3
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 82.1
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.3e-06 55.1 27 88.9
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 89.3
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 89.3
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 89.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 6.3e-06 55.1 28 85.7
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 89.3
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 8.2e-06 54.7 38 68.4
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 8.2e-06 54.7 28 85.7


User provided reference genes

Program Settings