Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 4.6e-135 484.6 244 100.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 2.1e-111 406.0 243 81.5
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 4.3e-109 398.3 244 79.9
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.8e-107 392.9 244 79.9
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 6.9e-107 391.0 244 78.3
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 6.9e-107 391.0 244 78.3
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 7.6e-106 387.5 244 76.6
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 9.9e-106 387.1 236 79.2
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.8e-105 385.2 244 76.2
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 7.1e-104 380.9 227 80.2
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.6e-103 379.8 238 77.7
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.6e-103 379.8 244 73.8
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 2.7e-103 379.0 244 75.0
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 6.0e-103 377.9 246 74.8
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 6.0e-103 377.9 240 74.2
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 1.3e-102 376.7 255 72.2
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.8e-102 376.3 232 78.4
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 2.3e-102 375.9 244 75.8
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.9e-102 375.2 255 71.8
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 5.1e-102 374.8 226 79.2
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 8.7e-102 374.0 240 74.6
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 8.7e-102 374.0 244 74.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.9e-101 372.9 222 81.5
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 3.3e-101 372.1 244 73.8
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 4.3e-101 371.7 226 79.2
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 5.6e-101 371.3 236 77.5
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 7.4e-101 370.9 228 78.5
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 2.1e-100 369.4 240 73.8
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.7e-100 368.6 227 77.1
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 6.2e-100 367.9 235 75.7
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.4e-99 366.7 229 76.9
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.4e-99 365.9 228 77.2
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 3.1e-99 365.5 228 77.2
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 3.1e-99 365.5 244 71.7
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 4.0e-99 365.2 227 78.4
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 5.3e-99 364.8 227 78.4
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 6.9e-99 364.4 238 75.2
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.2e-98 363.6 227 76.7
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 73.8
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.5e-98 363.2 238 76.1
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 2.6e-98 362.5 227 76.2
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 2.6e-98 362.5 236 74.2
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 4.5e-98 361.7 238 74.8
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 5.8e-98 361.3 228 73.7
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 5.8e-98 361.3 227 78.0
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.9e-97 359.0 226 74.3
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.9e-97 359.0 244 69.3
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 3.8e-97 358.6 244 70.5
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 4.9e-97 358.2 227 74.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 8.4e-97 357.5 222 77.5
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.1e-96 357.1 231 72.3
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.4e-96 356.7 244 71.7
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 3.2e-96 355.5 237 72.2
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.2e-96 355.5 224 77.2
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 9.3e-96 354.0 227 75.8
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.2e-95 353.6 228 71.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.1e-95 352.8 244 70.5
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 2.7e-95 352.4 227 75.8
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.5e-95 352.1 233 71.2
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.5e-95 352.1 237 70.9
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 6.0e-95 351.3 227 75.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.8e-94 349.7 232 75.4
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 5.1e-94 348.2 227 75.8
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 6.7e-94 347.8 229 71.6
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.1e-93 347.1 226 71.7
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.1e-93 347.1 226 71.7
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.1e-93 347.1 229 71.6
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 1.1e-93 347.1 229 71.6
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 1.1e-93 347.1 229 71.6
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.1e-93 347.1 229 71.6
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.9e-93 346.3 229 72.9
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 2.5e-93 345.9 227 73.1
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 5.6e-93 344.7 235 69.4
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 5.6e-93 344.7 229 71.2
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 5.6e-93 344.7 236 70.3
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 9.6e-93 344.0 223 74.0
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.8e-91 339.7 234 71.8
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.8e-91 339.7 240 68.3
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 1.8e-91 339.7 241 66.8
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.5e-90 336.7 266 66.5
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.8e-90 334.7 226 74.8
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 2.2e-89 332.8 229 70.3
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 3.8e-89 332.0 238 65.1
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 4.9e-89 331.6 245 66.1
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.6e-87 326.6 222 71.2
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.6e-87 326.6 277 63.5
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 6.7e-86 321.2 227 69.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.1e-85 320.5 209 74.2
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.1e-83 313.9 222 67.1
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.4e-83 312.8 197 75.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.6e-79 300.1 244 64.8
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.0e-78 297.4 220 68.2
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-78 297.0 195 75.9
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.1e-77 293.9 190 77.4
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 5.3e-75 285.0 225 60.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.1e-69 267.3 184 72.3
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.1e-64 250.8 234 55.1
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.1e-64 250.8 151 80.1
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 3.0e-62 242.7 224 51.8
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.4e-59 233.0 230 53.9
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.1e-56 224.2 230 51.3
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.4e-54 217.2 226 51.3
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.2e-53 214.2 158 64.6
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 9.1e-51 204.5 138 73.9
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.2e-50 204.1 232 49.6
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 1.0e-49 201.1 229 50.2
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 2.7e-47 193.0 264 40.2
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 2.7e-47 193.0 128 75.0
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 5.7e-45 185.3 208 49.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.4e-43 179.9 224 44.2
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 9.1e-43 177.9 197 52.8
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 5.0e-33 145.6 261 36.4
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.8e-31 139.8 172 44.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 2.2e-28 130.2 114 63.2
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.0e-25 121.3 80 72.5
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 2.3e-22 110.2 71 71.8
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.9e-19 100.5 62 75.8
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 5.1e-17 92.4 66 72.7
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 8.9e-14 81.6 127 40.2
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 2.2e-12 77.0 47 76.6
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 4.6e-10 69.3 50 70.0
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.9e-09 66.2 118 32.2
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 8.1e-07 58.5 42 57.1
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.1e-06 58.2 39 66.7
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 6.8e-06 55.5 49 53.1


User provided reference genes

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