Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14928 Davidia involucrata HOM05D000549 ORTHO05D184963 1.6e-89 332.8 181 100.0
Dinv20187 Davidia involucrata HOM05D000549 ORTHO05D008973 3.7e-25 119.0 69 81.2
PGR031G0697 Punica granatum HOM05D000549 ORTHO05D008973 1.1e-24 117.5 69 79.7
DCAR_013114 Daucus carota HOM05D000549 ORTHO05D008973 1.4e-24 117.1 69 79.7
CAN.G162.46 Capsicum annuum HOM05D000549 ORTHO05D008973 2.4e-24 116.3 75 74.7
Nitab4.5_0001148g0050 Nicotiana tabacum HOM05D000549 ORTHO05D008973 2.4e-24 116.3 75 74.7
Nitab4.5_0001241g0110 Nicotiana tabacum HOM05D000549 ORTHO05D008973 2.4e-24 116.3 75 74.7
Potri.001G398600 Populus trichocarpa HOM05D000549 ORTHO05D008973 2.4e-24 116.3 69 78.3
Solyc07g063010.3 Solanum lycopersicum HOM05D000549 ORTHO05D008973 2.4e-24 116.3 75 74.7
Sopen07g031200 Solanum pennellii HOM05D000549 ORTHO05D008973 2.4e-24 116.3 75 74.7
PGSC0003DMG400012409 Solanum tuberosum HOM05D000549 ORTHO05D008973 2.4e-24 116.3 75 74.7
TAR624G0845 Trochodendron aralioides HOM05D000549 ORTHO05D008973 2.4e-24 116.3 69 79.7
Duzib268G0752 Durio zibethinus HOM05D000549 ORTHO05D008973 3.2e-24 115.9 69 78.3
Lj8A154T80 Lonicera japonica HOM05D000549 ORTHO05D008973 3.2e-24 115.9 69 79.7
CiPaw.11G171000 Carya illinoinensis HOM05D000549 ORTHO05D008973 4.1e-24 115.5 69 76.8
Thecc.07G094500 Theobroma cacao HOM05D000549 ORTHO05D008973 4.1e-24 115.5 69 78.3
CsaV3_3G019500 Cucumis sativus L. HOM05D000549 ORTHO05D008973 5.4e-24 115.2 63 84.1
MD11G1251600 Malus domestica HOM05D000549 ORTHO05D008973 7.0e-24 114.8 69 76.8
Oeu019309.1 Olea europaea HOM05D000549 ORTHO05D008973 7.0e-24 114.8 75 74.7
QL08p022331 Quercus lobata HOM05D000549 ORTHO05D008973 7.0e-24 114.8 69 76.8
Haze_09443 Corylus avellana HOM05D000549 ORTHO05D008973 9.2e-24 114.4 70 75.7
Sabra16G0261300 Salix brachista HOM05D000549 ORTHO05D008973 9.2e-24 114.4 69 76.8
GSVIVG01014304001 Vitis vinifera HOM05D000549 ORTHO05D008973 9.2e-24 114.4 69 76.8
Manes.03G107000 Manihot esculenta HOM05D000549 ORTHO05D008973 1.2e-23 114.0 69 76.8
Atru.chr2.2437 Acer truncatum HOM05D000549 ORTHO05D008973 1.6e-23 113.6 69 76.8
ClCG05G009290 Citrullus lanatus HOM05D000549 ORTHO05D008973 1.6e-23 113.6 69 76.8
MELO3C019405.2 Cucumis melo HOM05D000549 ORTHO05D008973 1.6e-23 113.6 69 76.8
Gohir.A01G062201 Gossypium hirsutum HOM05D000549 ORTHO05D008973 1.6e-23 113.6 69 78.3
Hma1.2p1_0387F.1_g142000 Hydrangea macrophylla HOM05D000549 ORTHO05D008973 2.1e-23 113.2 69 76.8
Nn1g04151 Nelumbo nucifera HOM05D000549 ORTHO05D008973 2.1e-23 113.2 69 76.8
Sed0018147 Sechium edule HOM05D000549 ORTHO05D008973 2.1e-23 113.2 69 76.8
HPP92_015987 Vanilla planifolia HOM05D000549 ORTHO05D008973 3.5e-23 112.5 69 75.4
CSS0012700 Camellia sinensis var. sinensis HOM05D000549 ORTHO05D008973 4.6e-23 112.1 69 75.4
CSS0030990 Camellia sinensis var. sinensis HOM05D000549 ORTHO05D008973 4.6e-23 112.1 69 75.4
Migut.M00789 Erythranthe guttata HOM05D000549 ORTHO05D008973 4.6e-23 112.1 69 76.8
CANSAT56G3843 Cannabis sativa HOM05D000549 ORTHO05D008973 6.0e-23 111.7 69 76.8
Cpa.g.sc80.84 Carica papaya HOM05D000549 ORTHO05D008973 6.0e-23 111.7 69 76.8
CDE11G0549 Ceratophyllum demersum HOM05D000698 ORTHO05D008973 6.0e-23 111.7 69 76.8
Os01g0796400 Oryza sativa ssp. japonica HOM05D000549 ORTHO05D008973 6.0e-23 111.7 69 75.4
Prupe.4G177500 Prunus persica HOM05D000549 ORTHO05D008973 6.0e-23 111.7 63 79.4
Rhsim06G0201000 Rhododendron simsii HOM05D000549 ORTHO05D008973 6.0e-23 111.7 69 75.4
TWI38G0085 Tripterygium wilfordii HOM05D000549 ORTHO05D008973 6.0e-23 111.7 69 75.4
TAR626G0277 Trochodendron aralioides HOM05D000549 ORTHO05D008973 6.0e-23 111.7 69 75.4
FvH4_3g19690 Fragaria vesca HOM05D000549 ORTHO05D008973 7.8e-23 111.3 69 73.9
FAN11G2623 Fragaria x ananassa HOM05D000549 ORTHO05D008973 7.8e-23 111.3 69 73.9
FAN25G1998 Fragaria x ananassa HOM05D000549 ORTHO05D008973 7.8e-23 111.3 69 73.9
RcHm_v2.0_Chr5g0032991 Rosa chinensis HOM05D000549 ORTHO05D008973 7.8e-23 111.3 69 73.9
Sc16g0007090 Simmondsia chinensis HOM05D000549 ORTHO05D008973 7.8e-23 111.3 69 75.4
Actinidia09693 Actinidia chinensis HOM05D000549 ORTHO05D008973 1.0e-22 110.9 69 75.4
ECA234G0847 Erigeron canadensis HOM05D000223 ORTHO05D008973 1.0e-22 110.9 69 73.9
EL10Ac4g08211 Beta vulgaris HOM05D000549 ORTHO05D008973 1.3e-22 110.5 69 73.9
Eucgr.F03304 Eucalyptus grandis HOM05D000549 ORTHO05D008973 1.3e-22 110.5 69 75.4
Aqoxy1G02369 Aquilegia oxysepala HOM05D000549 ORTHO05D008973 1.7e-22 110.2 69 73.9
SalBow6G2784 Salvia bowleyana HOM05D000549 ORTHO05D008973 1.7e-22 110.2 69 73.9
vmacro11880 Vaccinium macrocarpon HOM05D000549 ORTHO05D008973 1.7e-22 110.2 69 73.9
AUR62019444 Chenopodium quinoa HOM05D000549 ORTHO05D008973 2.3e-22 109.8 82 64.6
Ca_23049_v3 Cicer arietinum L. HOM05D000549 ORTHO05D008973 2.3e-22 109.8 69 76.8
Lsat_1_v5_gn_5_128041 Lactuca sativa HOM05D000549 ORTHO05D008973 2.3e-22 109.8 69 72.5
Lj3g0011104 Lotus japonicus HOM05D000549 ORTHO05D008973 2.3e-22 109.8 69 75.4
ATR0150G011 Amborella trichopoda HOM05D000549 ORTHO05D008973 3.0e-22 109.4 69 75.4
Gohir.D01G048800 Gossypium hirsutum HOM05D000549 ORTHO05D008973 3.0e-22 109.4 69 75.4
Gorai.002G068600 Gossypium raimondii HOM05D000549 ORTHO05D008973 3.0e-22 109.4 69 75.4
AUR62039187 Chenopodium quinoa HOM05D000549 ORTHO05D008973 3.9e-22 109.0 69 72.5
HanXRQChr10g0302691 Helianthus annuus HOM05D000549 ORTHO05D008973 3.9e-22 109.0 69 72.5
Medtr8g058775 Medicago truncatula HOM05D000549 ORTHO05D008973 3.9e-22 109.0 69 75.4
Medtr8g061230 Medicago truncatula HOM05D000549 ORTHO05D008973 3.9e-22 109.0 69 75.4
Psat4g174480 Pisum sativum HOM05D000549 ORTHO05D008973 3.9e-22 109.0 69 75.4
Hund22858 Selenicereus undatus HOM05D000549 ORTHO05D008973 5.1e-22 108.6 69 73.9
Ciclev10009049m.g Citrus clementina HOM05D000549 ORTHO05D008973 6.6e-22 108.2 69 71.0
Phvul.011G160900 Phaseolus vulgaris HOM05D000549 ORTHO05D008973 6.6e-22 108.2 69 73.9
Zm00001eb369580 Zea mays HOM05D000549 ORTHO05D008973 6.6e-22 108.2 69 72.5
Lalb_Chr03g0030701 Lupinus albus HOM05D000549 ORTHO05D008973 8.6e-22 107.8 69 73.9
Carub.0003s1494 Capsella rubella HOM05D000549 ORTHO05D008973 1.1e-21 107.5 69 72.5
Glyma.06G254700 Glycine max HOM05D000549 ORTHO05D008973 1.1e-21 107.5 69 73.9
Rhsim06G0200700 Rhododendron simsii HOM05D000549 ORTHO05D008973 1.1e-21 107.5 69 75.4
Cc05_g11870 Coffea canephora HOM05D000549 ORTHO05D008973 1.5e-21 107.1 75 69.3
Hma1.2p1_0387F.1_g141990 Hydrangea macrophylla HOM05D000549 ORTHO05D008973 1.5e-21 107.1 60 81.7
TPR.G36705 Trifolium pratense HOM05D000549 ORTHO05D008973 1.9e-21 106.7 69 73.9
AL3G27680 Arabidopsis lyrata HOM05D000549 ORTHO05D008973 3.3e-21 105.9 69 71.0
AT3G15290 Arabidopsis thaliana HOM05D000549 ORTHO05D008973 3.3e-21 105.9 69 71.0
Thhalv10021099m.g Eutrema salsugineum HOM05D000549 ORTHO05D008973 3.3e-21 105.9 69 71.0
PSO541G5386 Papaver somniferum HOM05D000549 ORTHO05D008973 3.3e-21 105.9 69 71.0
MSTRG.6826 Avicennia marina HOM05D000549 ORTHO05D008973 4.3e-21 105.5 69 72.5
arahy.Tifrunner.gnm1.ann1.KD7CXP Arachis hypogaea HOM05D000549 ORTHO05D008973 7.3e-21 104.8 69 71.0
arahy.Tifrunner.gnm1.ann1.QP3SM1 Arachis hypogaea HOM05D000549 ORTHO05D008973 7.3e-21 104.8 69 71.0
Ah.04g164750 Amaranthus hybridus HOM05D000549 ORTHO05D008973 1.2e-20 104.0 69 69.6
THA.LOC104818085 Tarenaya hassleriana HOM05D000549 ORTHO05D008973 1.2e-20 104.0 69 71.0
CARHR090270 Cardamine hirsuta HOM05D000549 ORTHO05D008973 1.6e-20 103.6 69 69.6
Aa31LG8G2470 Aethionema arabicum HOM05D000549 ORTHO05D008973 2.1e-20 103.2 69 69.6
BcaC05g28999 Brassica carinata HOM05D000549 ORTHO05D008973 2.8e-20 102.8 69 69.6
A05p34190 Brassica napus HOM05D000549 ORTHO05D008973 2.8e-20 102.8 69 69.6
C05p51940 Brassica napus HOM05D000549 ORTHO05D008973 2.8e-20 102.8 69 69.6
BolC5t33880H Brassica oleracea HOM05D000549 ORTHO05D008973 2.8e-20 102.8 69 69.6
BraA05t22239Z Brassica rapa HOM05D000549 ORTHO05D008973 2.8e-20 102.8 69 69.6
Sp3g13490 Schrenkiella parvula HOM05D000549 ORTHO05D008973 4.7e-20 102.1 69 69.6
SGA_v2.0_scaffold73G24251 Striga asiatica HOM05D000549 ORTHO05D008973 1.1e-19 100.9 69 68.1
VMungo1127G0883 Vigna mungo HOM05D000549 ORTHO05D008973 1.1e-19 100.9 69 68.1
BcaC05g28998 Brassica carinata HOM05D000549 ORTHO05D008973 3.1e-19 99.4 69 66.7
unitig_37.g12570 Utricularia gibba HOM05D000223 ORTHO05D008973 4.0e-19 99.0 69 65.2
Peaxi162Scf00069g01626 Petunia axillaris HOM05D000549 ORTHO05D008973 4.4e-18 95.5 61 72.1
Mapoly0058s0041 Marchantia polymorpha HOM05D000549 ORTHO05D008973 2.9e-17 92.8 63 69.8
SMO119G0356 Selaginella moellendorffii HOM05D000549 ORTHO05D008973 1.9e-16 90.1 63 65.1
Pp3c22_7880 Physcomitrium patens HOM05D000549 ORTHO05D008973 3.2e-16 89.4 63 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2146 Anthoceros agrestis HOM05D000549 ORTHO05D008973 3.5e-15 85.9 63 61.9
PRCOL_00005281 Prasinoderma coloniale HOM05D000549 ORTHO05D008973 4.6e-15 85.5 61 62.3
Cfa026286 Carpinus fangiana HOM05D000549 ORTHO05D008973 1.3e-09 67.4 67 55.2
BcaB06g29553 Brassica carinata HOM05D000549 ORTHO05D008973 4.2e-08 62.4 45 66.7
Cre12.g534350 Chlamydomonas reinhardtii HOM05D000549 ORTHO05D008973 2.1e-07 60.1 61 45.9


User provided reference genes

Program Settings