Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.3e-185 652.1 337 100.0
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 3.8e-140 501.9 367 72.5
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.5e-139 500.0 367 72.2
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 4.2e-139 498.4 362 72.1
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.7e-138 495.0 365 72.3
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 8.8e-137 490.7 363 72.5
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.7e-135 486.5 362 71.5
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.8e-135 485.7 365 70.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 4.8e-135 485.0 365 70.7
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 2.4e-134 482.6 363 70.8
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.2e-132 476.1 365 69.9
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 2.5e-131 472.6 362 68.2
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.2e-131 472.2 363 68.3
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.2e-130 470.3 365 68.8
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 2.7e-130 469.2 369 67.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 4.0e-129 465.3 365 67.9
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.5e-128 463.4 365 67.4
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.5e-128 463.4 365 67.7
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 3.4e-128 462.2 415 62.7
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 7.5e-128 461.1 363 67.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 9.8e-128 460.7 365 67.9
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.3e-127 460.3 371 66.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.3e-127 460.3 363 68.6
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.7e-127 459.9 363 69.4
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.8e-127 459.1 359 67.7
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 3.7e-127 458.8 385 64.7
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 4.8e-127 458.4 362 65.5
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.3e-127 458.0 360 68.9
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 6.3e-127 458.0 363 68.3
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.4e-126 456.8 360 68.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.8e-126 456.4 363 67.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-126 456.4 364 67.3
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.6e-125 453.4 363 67.8
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.6e-125 453.4 361 67.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.6e-125 453.4 335 73.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.6e-125 453.4 363 66.4
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.0e-125 453.0 366 66.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.7e-125 452.6 333 73.9
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 7.7e-125 451.1 363 67.5
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.2e-124 449.5 364 65.9
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.9e-124 449.1 374 65.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 6.5e-124 448.0 363 67.2
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 6.5e-124 448.0 367 65.1
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 8.5e-124 447.6 362 64.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.5e-123 446.8 363 66.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.5e-123 446.8 363 66.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.9e-123 446.4 362 66.3
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.9e-123 446.4 365 66.6
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.9e-123 446.4 382 64.7
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.9e-123 446.4 377 63.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 3.2e-123 445.7 363 66.7
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 5.5e-123 444.9 365 64.4
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 5.5e-123 444.9 363 64.7
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.6e-122 443.4 360 66.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 8.0e-122 441.0 361 67.3
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.4e-121 440.3 372 64.8
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 8.8e-121 437.6 359 66.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.5e-120 436.8 359 64.6
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.6e-120 436.0 372 64.0
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.4e-120 435.3 362 65.5
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.9e-119 431.8 352 66.8
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 4.9e-119 431.8 363 65.0
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.1e-118 430.6 361 64.5
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.8e-118 429.9 332 67.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 9.1e-118 427.6 262 81.3
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.2e-117 427.2 364 63.7
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.3e-116 422.9 365 64.7
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 5.0e-116 421.8 435 56.3
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 6.6e-116 421.4 366 62.0
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 9.5e-115 417.5 335 66.0
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 4.9e-111 405.2 362 63.0
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 8.3e-111 404.4 332 63.9
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.6e-109 400.2 366 60.1
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.7e-108 396.7 365 61.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 8.0e-106 387.9 367 62.1
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.5e-104 383.6 361 58.4
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.3e-103 380.6 360 59.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 4.9e-103 378.6 357 56.0
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.9e-103 378.6 362 58.6
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.9e-103 378.6 244 77.5
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 4.6e-101 372.1 342 60.2
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 5.0e-100 368.6 355 58.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 8.6e-100 367.9 305 63.0
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.8e-98 362.8 361 57.1
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 4.1e-94 349.0 339 58.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.6e-93 347.1 370 53.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.0e-92 344.4 268 67.9
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 9.9e-88 327.8 265 68.7
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.3e-87 327.4 265 67.9
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 9.2e-86 321.2 334 51.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.6e-85 320.5 363 52.1
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.1e-85 320.1 273 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 8.6e-84 314.7 355 50.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.6e-82 310.5 265 66.4
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 3.6e-82 309.3 303 55.1
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 8.9e-81 304.7 265 66.0
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.5e-80 303.9 290 55.9
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.0e-80 303.5 285 58.2
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 9.9e-80 301.2 259 64.5
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 5.4e-78 295.4 265 63.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 4.6e-77 292.4 261 61.7
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 8.7e-76 288.1 256 61.3
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.1e-75 287.7 370 44.9
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.1e-69 266.9 209 70.8
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.0e-65 252.7 342 43.9
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 6.0e-61 238.8 347 43.5
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 7.4e-59 231.9 176 70.5
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.5e-56 222.6 221 55.2
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.9e-49 198.7 190 55.8
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.4e-48 196.4 438 33.3
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.2e-46 189.9 199 52.8
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.3e-43 179.5 217 47.0
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 6.5e-39 165.6 166 54.2
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.2e-38 163.3 144 63.9
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.3e-31 141.4 138 55.1
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.3e-31 141.4 118 58.5
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.8e-31 139.8 96 69.8
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 6.5e-31 139.0 146 51.4
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.5e-27 127.9 272 31.2
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 2.4e-25 120.6 81 72.8
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-24 118.2 147 49.7
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.3e-20 104.0 77 71.4
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.6e-19 100.5 75 70.7
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.2e-18 97.4 79 67.1
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.2e-18 97.4 81 69.1
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 7.0e-17 92.4 83 65.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 5.9e-16 89.4 266 30.8
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.5e-06 58.2 108 33.3
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 1.9e-06 57.8 29 86.2
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 1.9e-06 57.8 100 34.0
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 9.5e-06 55.5 99 32.3
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 9.5e-06 55.5 90 32.2


User provided reference genes

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