Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 4.6e-151 538.1 323 100.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.8e-131 473.0 324 89.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.1e-123 445.7 276 84.4
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 9.1e-115 417.5 287 77.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.8e-113 412.1 275 78.9
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.9e-111 404.4 313 71.6
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.9e-111 404.4 313 71.6
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.6e-109 399.4 229 88.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 4.8e-108 395.2 282 75.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.2e-106 390.6 310 69.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.5e-104 383.6 281 74.0
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 9.4e-104 380.9 287 73.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.1e-103 378.3 279 73.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.5e-101 373.6 284 69.7
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 4.4e-101 372.1 281 70.1
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 9.7e-101 370.9 281 71.5
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.1e-99 367.5 298 67.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 7.0e-99 364.8 289 67.1
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.2e-98 364.0 292 65.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 7.7e-98 361.3 280 70.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 7.7e-98 361.3 285 68.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.7e-95 352.8 271 67.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 9.8e-93 344.4 285 67.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.3e-92 344.0 285 65.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 8.3e-92 341.3 284 68.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 5.4e-91 338.6 277 68.6
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.2e-87 327.4 280 65.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.6e-87 327.0 277 65.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.8e-87 326.2 293 63.1
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.6e-87 325.9 277 65.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 4.7e-87 325.5 280 64.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 8.0e-87 324.7 284 65.1
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.0e-85 320.1 277 63.9
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 8.3e-84 314.7 281 63.0
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.7e-82 309.7 252 66.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.7e-81 307.0 273 62.3
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.7e-81 307.0 281 63.0
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.0e-81 305.4 282 63.1
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 6.6e-81 305.1 295 60.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.1e-80 304.3 289 61.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.9e-80 303.5 297 57.2
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.5e-80 303.1 284 61.6
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.2e-79 300.8 277 61.0
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.6e-79 300.4 282 62.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.7e-79 298.9 277 62.1
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.0e-78 297.7 271 62.7
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.0e-78 296.2 276 60.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.0e-78 296.2 275 60.7
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 6.8e-78 295.0 285 58.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 6.8e-78 295.0 267 62.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.9e-78 294.7 271 62.4
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.9e-78 294.7 271 62.0
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.2e-77 294.3 291 59.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.5e-77 293.9 277 58.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 4.4e-77 292.4 271 61.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.4e-77 292.4 271 61.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 4.4e-77 292.4 275 61.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 5.7e-77 292.0 275 60.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 7.5e-77 291.6 277 61.0
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.7e-76 290.4 298 55.7
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.2e-76 290.0 276 62.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.9e-76 289.7 271 61.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 2.9e-76 289.7 277 60.3
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.9e-76 288.9 298 59.1
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-75 287.0 277 62.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.1e-75 285.8 282 60.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 5.4e-75 285.4 278 57.9
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 5.4e-75 285.4 243 68.3
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 7.0e-75 285.0 286 58.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 7.0e-75 285.0 274 60.6
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.2e-74 284.3 271 61.6
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.2e-74 284.3 335 62.7
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.5e-74 282.7 284 60.9
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 7.8e-74 281.6 275 58.2
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-73 280.8 331 51.4
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.7e-73 280.4 273 59.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.0e-73 279.6 294 58.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.9e-73 279.3 295 56.3
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.0e-73 278.9 284 59.9
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.3e-72 276.2 272 57.4
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 4.3e-72 275.8 260 58.1
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.8e-71 273.1 289 57.1
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 8.0e-71 271.6 283 56.9
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 8.0e-71 271.6 283 56.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 8.0e-71 271.6 288 57.6
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.1e-70 271.2 277 56.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.1e-70 271.2 268 60.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.4e-70 270.8 279 57.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.8e-70 270.4 272 57.4
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 3.1e-70 269.6 298 56.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.1e-70 269.6 277 56.0
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 5.2e-70 268.9 282 57.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 5.2e-70 268.9 279 57.0
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 5.2e-70 268.9 281 57.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.2e-69 267.7 287 56.1
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.5e-69 267.3 281 56.9
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 2.0e-69 266.9 279 55.2
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 5.8e-69 265.4 273 56.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.2e-68 263.5 279 54.8
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.7e-68 262.7 287 56.1
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.7e-68 262.7 273 56.4
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.4e-67 260.0 274 58.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.2e-66 257.7 203 67.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.7e-66 256.5 280 54.6
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.0e-65 253.1 278 54.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.1e-64 251.1 276 56.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.9e-64 250.4 227 61.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.4e-62 244.2 222 62.2
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.2e-61 241.1 286 55.2
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.5e-61 240.7 272 56.6
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.5e-61 240.7 273 56.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.0e-61 240.4 286 54.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 5.8e-61 238.8 167 76.6
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.5e-61 238.4 222 61.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 9.9e-61 238.0 287 54.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.3e-60 237.7 273 55.7
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.9e-60 236.5 284 54.6
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 8.3e-60 235.0 288 53.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.3e-60 235.0 285 53.7
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-59 234.6 288 54.2
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.1e-59 232.6 284 53.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 9.2e-59 231.5 274 54.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.7e-58 229.9 287 52.3
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 4.6e-58 229.2 161 73.3
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.0e-57 228.0 162 74.7
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.0e-57 228.0 287 51.2
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.9e-57 226.1 258 58.1
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.3e-56 223.0 285 48.4
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 4.3e-56 222.6 273 49.5
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.2e-55 218.8 231 56.3
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.9e-51 207.2 276 49.3
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.4e-51 206.8 159 69.2
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.4e-51 205.7 172 63.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.1e-48 198.0 123 77.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.1e-48 198.0 251 51.8
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.6e-47 194.1 275 46.2
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 8.1e-47 191.8 278 45.3
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-44 184.5 278 45.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.4e-43 181.0 278 45.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.2e-43 179.9 180 56.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.6e-42 176.0 272 42.3
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 8.1e-39 165.2 262 43.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.4e-38 163.7 231 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.2e-34 151.4 120 63.3
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.0e-34 149.1 131 67.2
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.8e-33 147.5 300 38.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 3.7e-31 139.8 289 37.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.4e-30 137.9 145 53.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 4.0e-30 136.3 273 38.5
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 6.9e-30 135.6 271 39.1
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.5e-29 134.4 207 43.0
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.1e-27 128.3 147 55.1
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.1e-24 118.2 193 37.8
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 9.6e-24 115.2 75 76.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.0e-20 105.1 118 57.6
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.3e-20 104.8 150 50.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.3e-20 104.8 99 64.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 3.8e-20 103.2 170 41.2
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 7.9e-18 95.5 99 52.5
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 7.9e-10 68.9 52 61.5
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.0e-09 67.0 104 46.2
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 8.8e-09 65.5 53 69.8
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.8e-07 60.5 46 63.0


User provided reference genes

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