Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14854 Davidia involucrata HOM05D007158 ORTHO05D007424 3.1e-94 349.0 250 100.0
Dinv33973 Davidia involucrata HOM05D007158 ORTHO05D007424 1.6e-50 203.8 203 71.9
Cfa007880 Carpinus fangiana HOM05D007158 ORTHO05D007424 8.2e-47 191.4 183 63.9
QL02p049322 Quercus lobata HOM05D007158 ORTHO05D007424 8.2e-47 191.4 183 69.4
Actinidia17647 Actinidia chinensis HOM05D007158 ORTHO05D007424 4.1e-46 189.1 185 74.1
Rhsim08G0084200 Rhododendron simsii HOM05D007158 ORTHO05D007424 6.9e-46 188.3 183 65.6
Hma1.2p1_0500F.1_g167110 Hydrangea macrophylla HOM05D007158 ORTHO05D007424 9.1e-46 188.0 187 67.9
TAR629G2388 Trochodendron aralioides HOM05D007158 ORTHO05D007424 1.3e-44 184.1 188 69.7
COL.COLO4_03615 Corchorus olitorius HOM05D007158 ORTHO05D007424 1.4e-41 174.1 185 64.9
Prupe.3G150100 Prunus persica HOM05D007158 ORTHO05D007424 3.0e-41 172.9 183 62.3
MELO3C010379.2 Cucumis melo HOM05D007158 ORTHO05D007424 5.1e-41 172.2 197 54.3
ClCG07G016450 Citrullus lanatus HOM05D007158 ORTHO05D007424 2.6e-40 169.9 193 52.8
Thecc.04G126100 Theobroma cacao HOM05D007158 ORTHO05D007424 7.4e-40 168.3 185 65.9
Duzib138G0519 Durio zibethinus HOM05D007158 ORTHO05D007424 6.3e-39 165.2 184 64.1
MD09G1258200 Malus domestica HOM05D007158 ORTHO05D007424 1.1e-38 164.5 188 61.2
CsaV3_4G010370 Cucumis sativus L. HOM05D007158 ORTHO05D007424 2.4e-38 163.3 193 53.4
Glyma.18G293000 Glycine max HOM05D007158 ORTHO05D007424 4.1e-38 162.5 187 63.1
CiPaw.04G044500 Carya illinoinensis HOM05D007158 ORTHO05D007424 6.9e-38 161.8 183 58.5
CAN.G225.14 Capsicum annuum HOM05D007158 ORTHO05D007424 1.5e-37 160.6 192 60.9
ECA232G0903 Erigeron canadensis HOM05D007158 ORTHO05D007424 1.5e-37 160.6 187 66.3
GSVIVG01030945001 Vitis vinifera HOM05D007158 ORTHO05D007424 1.5e-37 160.6 184 65.2
vmacro18064 Vaccinium macrocarpon HOM05D007158 ORTHO05D007424 3.4e-37 159.5 192 65.1
Glyma.02G090200 Glycine max HOM05D007158 ORTHO05D007424 5.9e-37 158.7 184 52.7
Gohir.A11G161300 Gossypium hirsutum HOM05D007158 ORTHO05D007424 7.7e-37 158.3 185 62.7
Ciclev10012598m.g Citrus clementina HOM05D007158 ORTHO05D007424 2.2e-36 156.8 183 50.8
Cc07_g08430 Coffea canephora HOM05D007158 ORTHO05D007424 2.2e-36 156.8 189 60.8
Lalb_Chr10g0091481 Lupinus albus HOM05D007158 ORTHO05D007424 2.2e-36 156.8 186 50.0
Gohir.D11G167600 Gossypium hirsutum HOM05D007158 ORTHO05D007424 2.9e-36 156.4 185 62.2
Gorai.007G178700 Gossypium raimondii HOM05D007158 ORTHO05D007424 2.9e-36 156.4 185 62.2
TAR374G0148 Trochodendron aralioides HOM05D007158 ORTHO05D007424 2.9e-36 156.4 187 65.2
Phvul.008G009100 Phaseolus vulgaris HOM05D007158 ORTHO05D007424 3.2e-35 152.9 184 58.7
Lj4A182G65 Lonicera japonica HOM05D007158 ORTHO05D007424 4.2e-35 152.5 124 66.9
Duzib133G0688 Durio zibethinus HOM05D007158 ORTHO05D007424 5.5e-35 152.1 183 61.2
Sopen02g014350 Solanum pennellii HOM05D007158 ORTHO05D007424 5.5e-35 152.1 196 58.7
DCAR_025891 Daucus carota HOM05D007158 ORTHO05D007424 7.2e-35 151.8 188 56.4
PGSC0003DMG400010413 Solanum tuberosum HOM05D007158 ORTHO05D007424 1.6e-34 150.6 196 56.1
Oeu047435.1 Olea europaea HOM05D007158 ORTHO05D007424 2.1e-34 150.2 205 59.5
Potri.017G121000 Populus trichocarpa HOM05D007158 ORTHO05D007424 2.1e-34 150.2 200 53.0
Lsat_1_v5_gn_4_156301 Lactuca sativa HOM05D007158 ORTHO05D007424 2.7e-34 149.8 187 58.8
Solyc02g063280.4 Solanum lycopersicum HOM05D007158 ORTHO05D007424 3.6e-34 149.4 198 57.1
Atru.chr1.1578 Acer truncatum HOM05D007158 ORTHO05D007424 1.4e-33 147.5 183 56.3
Manes.01G113800 Manihot esculenta HOM05D007158 ORTHO05D007424 2.3e-33 146.7 185 58.9
TWI74G0884 Tripterygium wilfordii HOM05D007158 ORTHO05D007424 1.1e-32 144.4 183 61.2
Cpa.g.sc170.15 Carica papaya HOM05D007158 ORTHO05D007424 1.5e-32 144.1 196 55.1
Peaxi162Scf00343g00058 Petunia axillaris HOM05D007158 ORTHO05D007424 1.5e-32 144.1 199 57.3
RcHm_v2.0_Chr1g0332591 Rosa chinensis HOM05D007158 ORTHO05D007424 4.4e-32 142.5 184 55.4
Eucgr.F02798 Eucalyptus grandis HOM05D007158 ORTHO05D007424 7.4e-32 141.7 189 51.3
PGR004G0702 Punica granatum HOM05D007158 ORTHO05D007424 9.7e-32 141.4 183 49.7
Sabra17G0103400 Salix brachista HOM05D007158 ORTHO05D007424 9.7e-32 141.4 200 48.5
CANSAT78G1746 Cannabis sativa HOM05D007158 ORTHO05D007424 2.2e-31 140.2 185 55.1
HanXRQChr09g0262471 Helianthus annuus HOM05D007158 ORTHO05D007424 2.2e-31 140.2 144 61.8
Nitab4.5_0002644g0050 Nicotiana tabacum HOM05D007158 ORTHO05D007424 2.8e-31 139.8 196 56.1
Aqoxy3G00164 Aquilegia oxysepala HOM05D007158 ORTHO05D007424 8.2e-31 138.3 198 57.1
Nn4g24036 Nelumbo nucifera HOM05D007158 ORTHO05D007424 8.2e-31 138.3 187 60.4
Nitab4.5_0000036g0590 Nicotiana tabacum HOM05D007158 ORTHO05D007424 8.2e-31 138.3 190 56.8
Rhsim10G0076900 Rhododendron simsii HOM05D007158 ORTHO05D007424 1.8e-30 137.1 174 52.3
Migut.H00250 Erythranthe guttata HOM05D007158 ORTHO05D007424 2.4e-30 136.7 185 47.6
VMungo1383G1080 Vigna mungo HOM05D007158 ORTHO05D007424 7.0e-30 135.2 184 52.7
CDE04G0479 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 9.1e-30 134.8 188 47.3
MSTRG.2781 Avicennia marina HOM05D007158 ORTHO05D007424 2.6e-29 133.3 186 58.6
arahy.Tifrunner.gnm1.ann1.896A9W Arachis hypogaea HOM05D007158 ORTHO05D007424 1.0e-28 131.3 188 55.9
arahy.Tifrunner.gnm1.ann1.5M3IQK Arachis hypogaea HOM05D007158 ORTHO05D007424 1.3e-28 131.0 189 55.6
Potri.004G094500 Populus trichocarpa HOM05D007158 ORTHO05D007424 1.7e-28 130.6 202 48.5
ATR0743G078 Amborella trichopoda HOM05D007158 ORTHO05D007424 8.5e-28 128.3 183 57.4
Lj1g0013464 Lotus japonicus HOM05D007158 ORTHO05D007424 8.5e-28 128.3 183 45.9
Haze_14197 Corylus avellana HOM05D007158 ORTHO05D007424 3.2e-27 126.3 104 62.5
Hund13698 Selenicereus undatus HOM05D007158 ORTHO05D007424 3.2e-27 126.3 202 49.5
Medtr7g082850 Medicago truncatula HOM05D007158 ORTHO05D007424 1.2e-26 124.4 184 47.8
AUR62023262 Chenopodium quinoa HOM05D007158 ORTHO05D007424 1.6e-26 124.0 124 58.1
Sc10g0001000 Simmondsia chinensis HOM05D007158 ORTHO05D007424 1.6e-26 124.0 187 51.9
SGA_v2.0_scaffold202G41480 Striga asiatica HOM05D007158 ORTHO05D007424 1.6e-26 124.0 203 54.7
FAN10G2330 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.1e-26 123.6 183 53.6
CDE06G2846 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 4.7e-26 122.5 186 50.5
Sabra04G0063800 Salix brachista HOM05D007158 ORTHO05D007424 4.7e-26 122.5 195 49.7
Psat3g097040 Pisum sativum HOM05D007158 ORTHO05D007424 6.1e-26 122.1 193 43.0
FvH4_7g05720 Fragaria vesca HOM05D007158 ORTHO05D007424 8.0e-26 121.7 183 49.2
FAN01G1160 Fragaria x ananassa HOM05D007158 ORTHO05D007424 8.0e-26 121.7 183 49.2
TPR.G28397 Trifolium pratense HOM05D007158 ORTHO05D007424 1.4e-25 120.9 190 48.9
Ah.10g037870 Amaranthus hybridus HOM05D007158 ORTHO05D007424 5.2e-25 119.0 126 56.3
Sabra17G0100100 Salix brachista HOM05D007158 ORTHO05D007424 3.3e-24 116.3 205 45.9
PSO339G0418 Papaver somniferum HOM05D007158 ORTHO05D007424 5.7e-24 115.5 128 56.2
Zm00001eb300940 Zea mays HOM05D007158 ORTHO05D007424 1.7e-23 114.0 127 55.9
FAN23G0239 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.8e-23 113.2 183 50.3
Os01g0505700 Oryza sativa ssp. japonica HOM05D007158 ORTHO05D007424 8.2e-23 111.7 136 52.9
Rhsim10G0074300 Rhododendron simsii HOM05D007158 ORTHO05D007424 1.4e-22 110.9 174 46.6
Sed0005493 Sechium edule HOM05D007158 ORTHO05D007424 9.1e-22 108.2 158 46.8
Ca_08098_v3 Cicer arietinum L. HOM05D007158 ORTHO05D007424 5.9e-21 105.5 184 40.8
FAN03G1259 Fragaria x ananassa HOM05D007158 ORTHO05D007424 1.0e-20 104.8 183 48.6
PSO384G2845 Papaver somniferum HOM05D007158 ORTHO05D007424 1.7e-20 104.0 81 69.1
EL10Ac2g04517 Beta vulgaris HOM05D007158 ORTHO05D007424 2.2e-20 103.6 129 50.4
FAN04G1654 Fragaria x ananassa HOM05D007158 ORTHO05D007424 5.0e-20 102.4 183 48.1
Oeu061824.1 Olea europaea HOM05D007158 ORTHO05D007424 9.4e-19 98.2 159 43.4
HPP92_023114 Vanilla planifolia HOM05D007158 ORTHO05D007424 1.6e-18 97.4 190 47.4
THA.LOC104809979 Tarenaya hassleriana HOM05D007158 ORTHO05D007424 1.1e-14 84.7 194 34.5
SHI25695 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-14 83.6 79 50.6
Mapoly0099s0058 Marchantia polymorpha HOM05D007158 ORTHO05D007424 6.5e-12 75.5 136 39.7
Pp3c14_9040 Physcomitrium patens HOM05D007158 ORTHO05D007424 3.2e-11 73.2 89 47.2
SMO119G0024 Selaginella moellendorffii HOM05D007158 ORTHO05D007424 2.8e-10 70.1 55 56.4
BraA01t03075Z Brassica rapa HOM05D011338 ORTHO05D007424 1.8e-09 67.4 58 50.0
A01p29410 Brassica napus HOM05D011338 ORTHO05D007424 3.0e-09 66.6 50 54.0
Carub.0002s0469 Capsella rubella HOM05D007158 ORTHO05D007424 4.0e-09 66.2 51 52.9
Haze_14196 Corylus avellana HOM05D007158 ORTHO05D007424 4.0e-09 66.2 84 54.8
AagrBONN_evm.TU.Sc2ySwM_117.711 Anthoceros agrestis HOM05D007158 ORTHO05D007424 5.2e-09 65.9 146 37.7
AT1G60640 Arabidopsis thaliana HOM05D007158 ORTHO05D007424 8.8e-09 65.1 173 34.1
CARHR052290 Cardamine hirsuta HOM05D007158 ORTHO05D007424 8.8e-09 65.1 51 52.9
Thhalv10023615m.g Eutrema salsugineum HOM05D011338 ORTHO05D007424 3.4e-08 63.2 50 50.0
BolC1t03688H Brassica oleracea HOM05D011338 ORTHO05D007424 5.7e-08 62.4 173 39.3
CBR_g32195 Chara braunii HOM05D007158 ORTHO05D007424 5.7e-08 62.4 51 52.9
MD00G1054400 Malus domestica HOM05D007158 ORTHO05D007424 4.9e-07 59.3 78 46.2
BcaC09g49385 Brassica carinata HOM05D011338 ORTHO05D007424 6.3e-07 58.9 173 38.2
C01p37190 Brassica napus HOM05D011338 ORTHO05D007424 6.3e-07 58.9 173 38.2
Rhsim10G0075600 Rhododendron simsii HOM05D007158 ORTHO05D338363 1.8e-06 57.4 174 33.9
C04p25850 Brassica napus HOM05D011338 ORTHO05D007424 3.1e-06 56.6 39 61.5
BolC4t24223H Brassica oleracea HOM05D011338 ORTHO05D007424 3.1e-06 56.6 39 61.5
Sp2g04080 Schrenkiella parvula HOM05D011338 ORTHO05D007424 3.1e-06 56.6 173 35.8
Aa31LG2G9720 Aethionema arabicum HOM05D011338 ORTHO05D007424 9.2e-06 55.1 197 32.5


User provided reference genes

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