Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 0.0e+00 1351.3 676 100.0
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 0.0e+00 1078.2 714 76.2
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 0.0e+00 1077.4 707 76.9
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.6e-302 1042.3 710 73.8
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 2.3e-301 1038.5 718 72.4
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 3.6e-299 1031.2 709 72.1
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.5e-297 1025.8 748 69.7
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 4.9e-296 1020.8 711 70.6
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.0e-293 1013.1 736 68.8
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.3e-293 1012.7 714 70.7
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 3.1e-290 1001.5 711 69.6
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 9.9e-289 996.5 713 70.4
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 9.9e-289 996.5 712 69.1
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.7e-288 995.7 710 69.9
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 3.8e-288 994.6 714 71.1
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 4.9e-288 994.2 709 69.5
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.2e-287 991.5 774 64.7
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 3.9e-285 984.6 718 70.6
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 4.8e-283 977.6 709 69.5
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 1.1e-282 976.5 710 68.5
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.5e-281 972.6 759 65.9
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 5.8e-281 970.7 710 68.2
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 1.6e-278 962.6 712 67.7
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 8.7e-277 956.8 753 67.1
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 1.5e-276 956.1 714 66.8
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 4.9e-272 941.0 712 67.0
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.4e-271 939.5 683 68.5
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 2.1e-270 935.6 712 65.9
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 1.1e-268 929.9 708 65.4
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.5e-268 929.5 654 69.0
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 5.6e-268 927.5 707 66.2
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 1.6e-267 926.0 714 66.0
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.8e-267 925.2 714 66.1
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.7e-267 924.9 708 66.1
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.8e-266 922.5 709 65.2
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 2.4e-266 922.2 709 64.0
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 3.1e-266 921.8 708 64.3
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 4.0e-266 921.4 710 65.6
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.0e-264 916.8 710 64.8
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.7e-264 916.0 707 64.6
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 3.8e-264 914.8 705 65.0
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 4.9e-264 914.4 708 65.1
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 8.4e-264 913.7 710 65.9
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.1e-263 913.3 708 64.4
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.1e-263 913.3 709 64.6
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 3.2e-263 911.8 711 65.0
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 4.2e-263 911.4 701 65.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 7.1e-263 910.6 664 68.7
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 2.7e-262 908.7 708 65.0
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 2.7e-262 908.7 707 64.8
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 4.6e-262 907.9 735 62.4
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 6.0e-262 907.5 712 66.2
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.0e-261 906.7 706 63.7
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 3.9e-261 904.8 711 63.9
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 3.3e-260 901.7 711 63.7
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.6e-259 899.4 739 63.1
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 6.3e-259 897.5 710 63.5
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.1e-258 896.7 710 63.2
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.4e-258 895.6 734 63.2
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.5e-257 892.9 734 63.1
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 2.6e-257 892.1 710 63.0
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 4.5e-257 891.3 710 63.4
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 5.9e-257 891.0 710 63.1
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 7.7e-257 890.6 709 63.5
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.0e-256 890.2 710 63.0
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.8e-256 888.3 711 62.9
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 6.5e-256 887.5 710 63.1
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.1e-255 886.7 708 62.6
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.4e-253 879.8 614 72.3
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 6.7e-253 877.5 710 62.1
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.3e-252 875.2 708 62.4
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.4e-250 869.8 708 62.6
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 8.5e-248 860.5 711 62.4
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.1e-247 860.1 710 61.4
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 4.2e-247 858.2 649 66.7
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 3.0e-245 852.0 734 60.9
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 2.8e-243 845.5 673 65.7
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.1e-242 843.6 668 64.8
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.6e-241 839.0 712 61.0
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 7.7e-241 837.4 673 63.3
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.4e-234 815.8 755 58.5
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 1.2e-230 803.5 658 60.3
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.5e-228 796.6 1006 46.3
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 1.7e-227 793.1 710 59.7
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 3.2e-223 778.9 672 58.2
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.4e-221 773.5 618 65.4
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 1.8e-221 773.1 683 58.7
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 6.3e-219 764.6 524 73.3
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 4.5e-217 758.4 559 67.6
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 2.3e-213 746.1 571 65.8
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.0e-212 743.0 631 62.0
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 7.8e-209 731.1 529 71.3
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 4.9e-203 711.8 515 68.7
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 3.9e-192 675.6 676 54.1
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 3.4e-180 636.0 579 58.2
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.2e-172 610.9 637 52.3
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.9e-159 567.0 430 66.5
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 3.1e-157 559.7 657 45.8
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 6.7e-152 542.0 681 45.2
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 2.6e-140 503.4 406 63.5
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.8e-139 499.6 387 66.9
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.3e-127 459.9 408 57.1
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.0e-123 448.4 325 68.0
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.2e-122 443.4 369 59.9
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 6.5e-115 419.1 277 72.9
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 1.5e-111 407.9 407 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.4e-111 406.8 430 49.5
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 4.2e-106 389.8 386 53.6
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.4e-101 374.0 299 64.2
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 4.7e-89 333.2 352 49.7
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.0e-87 327.8 317 54.3
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.7e-81 306.6 297 52.2
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 6.2e-81 306.2 765 33.3
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.4e-79 300.4 284 53.5
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 5.8e-71 273.1 418 39.7
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.1e-68 264.6 434 38.5
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.3e-62 245.4 233 57.1
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 2.1e-52 211.5 656 29.0
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-52 210.3 385 35.1
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.2e-44 185.7 547 29.4
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.0e-43 181.0 137 66.4
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 8.7e-43 179.5 279 39.1
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 2.1e-41 174.9 121 71.9
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 6.9e-40 169.9 112 82.1
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 9.3e-37 159.5 103 77.7
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 4.3e-34 150.6 333 36.9
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 9.6e-34 149.4 125 61.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 2.4e-32 144.8 84 77.4
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.6e-20 105.5 74 63.5
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 6.7e-19 100.1 163 44.8
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 7.4e-18 96.7 400 25.5
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 9.7e-18 96.3 88 50.0
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.3e-17 95.9 360 27.2
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.8e-17 94.7 425 24.9
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 6.3e-17 93.6 68 70.6
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.5e-13 81.6 64 60.9
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.5e-13 80.5 100 46.0
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 7.2e-13 80.1 50 70.0
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.4e-13 79.7 53 64.2
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-12 79.3 46 73.9
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.7e-12 78.2 53 62.3
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.7e-12 77.4 50 68.0
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.7e-12 77.4 46 71.7
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.2e-11 73.9 46 69.6
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 1.1e-10 72.8 104 38.5
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 1.1e-08 66.2 44 75.0
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 4.1e-08 64.3 53 62.3


User provided reference genes

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