Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 0.0e+00 1186.0 624 100.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 4.5e-211 738.4 689 62.8
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.1e-169 600.9 622 56.9
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.8e-165 586.3 636 56.4
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.5e-163 579.3 603 55.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 8.3e-157 558.1 647 53.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.0e-151 539.3 648 51.2
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 8.1e-144 515.0 555 56.2
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 4.0e-143 512.7 654 48.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.8e-142 508.8 690 48.8
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.9e-141 505.8 631 49.9
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.9e-140 503.8 655 49.2
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.4e-140 502.3 632 51.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.3e-137 491.9 624 50.5
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.6e-136 490.7 635 49.3
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.0e-134 483.8 704 46.2
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-133 479.9 696 46.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.2e-132 476.5 658 47.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.1e-129 468.0 641 49.1
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.1e-128 463.8 646 47.7
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 4.0e-127 459.5 630 46.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 9.0e-127 458.4 625 48.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.4e-126 456.4 636 46.1
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.4e-125 451.8 640 46.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.5e-123 446.4 680 44.0
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.3e-122 444.5 625 46.1
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.3e-122 443.7 670 44.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.3e-122 443.7 666 44.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.6e-122 442.2 653 46.7
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 6.6e-122 442.2 688 44.5
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.7e-122 441.8 682 44.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 7.3e-121 438.7 630 46.3
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.1e-120 435.3 677 43.4
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.4e-119 434.5 635 46.0
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.4e-119 434.5 678 43.2
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 5.3e-119 432.6 704 42.5
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 7.6e-118 428.7 702 43.0
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-116 424.9 620 45.2
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.3e-114 417.9 671 43.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.7e-114 415.2 629 43.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 7.4e-113 412.1 662 42.7
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-112 411.4 679 41.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 4.8e-112 409.5 661 43.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 7.6e-110 402.1 681 41.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.9e-109 399.4 648 41.7
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 8.4e-109 398.7 642 43.0
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 4.2e-108 396.4 652 41.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 5.5e-108 396.0 634 43.1
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 7.1e-108 395.6 635 42.2
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 3.3e-105 386.7 669 41.1
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.1e-104 384.0 694 40.1
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.7e-104 383.3 578 43.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.7e-104 383.3 655 42.1
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 6.9e-103 379.0 635 41.4
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.6e-102 377.1 693 39.4
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 4.5e-102 376.3 634 41.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 7.9e-99 365.5 680 39.0
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 8.7e-98 362.1 658 41.9
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.9e-97 360.9 655 39.5
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 5.7e-97 359.4 625 42.9
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 9.7e-97 358.6 639 39.6
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.8e-96 357.1 706 38.4
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 5.9e-94 349.4 701 38.5
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 3.8e-93 346.7 710 36.8
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.0e-93 346.3 611 39.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.2e-91 341.7 722 38.0
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.6e-91 341.3 629 39.0
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.6e-91 341.3 629 39.0
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.1e-91 340.9 623 40.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.7e-91 340.5 646 38.9
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 3.6e-91 340.1 629 38.8
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.6e-91 339.7 655 39.7
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-90 337.8 651 39.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 4.3e-89 333.2 625 39.2
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 4.3e-89 333.2 620 40.2
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 9.7e-89 332.0 733 35.6
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 5.3e-87 326.2 605 40.3
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 5.3e-87 326.2 779 34.1
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 6.9e-87 325.9 626 38.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 9.1e-87 325.5 633 37.9
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 9.1e-87 325.5 633 37.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.0e-86 324.3 753 34.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 7.7e-86 322.4 629 37.7
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.0e-85 322.0 625 37.6
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.6e-83 313.5 653 39.2
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.0e-82 310.5 622 36.8
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.5e-81 308.1 830 31.9
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.3e-81 307.0 834 31.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 9.7e-81 305.4 666 36.8
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.3e-80 305.1 623 37.1
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 2.8e-80 303.9 651 37.2
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.4e-79 301.6 621 38.3
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.8e-79 301.2 672 36.5
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 7.0e-79 299.3 628 36.1
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 9.1e-79 298.9 519 41.6
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 4.5e-78 296.6 637 37.7
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.9e-78 296.2 676 35.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.8e-77 293.5 457 44.4
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.9e-76 291.2 724 34.0
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 4.2e-76 290.0 628 35.8
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 4.2e-76 290.0 589 39.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 5.5e-76 289.7 742 33.2
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.1e-75 287.7 586 40.6
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.0e-74 285.4 705 34.2
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-74 285.0 650 34.5
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.1e-71 275.4 621 34.6
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 9.1e-71 272.3 525 39.4
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.1e-68 265.4 863 30.6
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.9e-68 264.6 795 30.3
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.1e-67 261.2 621 36.1
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 4.0e-66 256.9 694 34.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.1e-63 248.8 662 32.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 4.1e-63 246.9 660 32.3
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.7e-62 244.2 545 33.8
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.7e-62 244.2 896 29.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.2e-60 236.9 631 32.5
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.8e-58 231.5 637 33.3
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 7.5e-57 226.1 635 32.0
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.2e-56 224.6 676 32.1
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-53 215.3 173 66.5
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-52 212.2 577 34.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.6e-52 209.9 608 31.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.8e-50 204.9 610 31.8
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.0e-49 201.4 615 30.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-48 198.7 614 30.9
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.2e-48 198.0 597 32.7
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.2e-48 198.0 426 35.0
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-45 188.3 806 26.8
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.6e-43 181.8 532 32.1
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 4.7e-43 180.3 441 35.1
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-41 175.6 162 58.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.5e-41 175.3 656 27.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.4e-41 173.7 331 39.6
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.3e-37 162.2 318 39.3
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 8.1e-35 152.9 614 29.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 8.1e-35 152.9 249 43.0
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.6e-33 147.9 177 49.7
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.8e-33 146.7 696 27.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 4.9e-32 143.7 248 39.5
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 6.6e-29 133.3 347 32.6
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.5e-28 131.3 205 40.0
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-24 117.9 197 46.2
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 6.4e-24 116.7 471 28.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.2e-23 114.4 357 30.5
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 3.2e-23 114.4 178 43.3
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.1e-23 114.0 652 26.2
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 4.1e-23 114.0 357 30.5
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.5e-22 110.9 114 57.0
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.6e-22 110.5 150 46.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.3e-21 109.0 383 31.1
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 5.6e-20 103.6 100 50.0
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 7.3e-20 103.2 419 27.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.6e-19 102.1 167 40.1
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.6e-19 102.1 65 76.9
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.7e-16 92.0 182 38.5
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.8e-16 90.9 83 50.6
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.4e-16 89.7 541 25.1
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.1e-15 89.4 257 33.1
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.7e-14 84.7 195 33.3
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 7.8e-14 83.2 60 61.7
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-13 82.8 195 33.3
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 1.1e-12 79.3 93 51.6
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 4.3e-12 77.4 123 39.8
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 1.3e-11 75.9 105 47.6
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.3e-11 75.9 505 24.4
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 1.6e-11 75.5 214 35.5
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.8e-11 73.9 91 40.7
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.8e-10 72.0 95 40.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 3.4e-09 67.8 85 45.9
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 8.4e-08 63.2 295 30.2
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 1.1e-07 62.8 160 31.9
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 7.1e-07 60.1 110 34.5


User provided reference genes

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