Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 4.8e-185 651.0 316 100.0
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.7e-127 459.1 300 74.0
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 3.8e-126 455.3 316 72.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.0e-118 430.6 306 69.6
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 9.5e-117 424.1 315 68.6
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 2.1e-116 422.9 312 69.6
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 6.1e-116 421.4 317 67.8
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.5e-114 416.8 316 67.1
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 7.5e-114 414.5 310 67.1
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-111 406.8 306 65.4
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 4.6e-111 405.2 317 65.3
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 4.6e-111 405.2 315 65.7
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.3e-110 403.7 315 66.0
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 8.6e-110 401.0 302 67.5
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 1.1e-109 400.6 309 65.0
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.5e-109 400.2 233 79.4
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.5e-109 400.2 309 66.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.9e-109 399.8 317 63.7
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.9e-109 399.8 300 68.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 2.5e-109 399.4 301 68.1
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 2.1e-108 396.4 299 68.2
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 1.4e-107 393.7 338 58.9
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 1.5e-106 390.2 323 59.8
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.5e-106 390.2 229 77.7
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 7.5e-106 387.9 305 63.9
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 7.5e-106 387.9 315 62.5
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.9e-105 386.0 354 59.0
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 3.7e-105 385.6 316 63.9
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 1.9e-104 383.3 295 64.7
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 1.9e-104 383.3 322 59.3
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 9.2e-104 380.9 314 62.4
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.2e-104 380.9 295 64.4
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.0e-103 378.3 295 64.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 7.8e-103 377.9 220 78.6
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.0e-102 377.5 227 76.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.0e-102 377.5 256 71.1
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.7e-102 376.7 219 79.9
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 8.6e-102 374.4 313 60.4
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 8.6e-102 374.4 236 75.0
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 8.6e-102 374.4 313 62.0
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.1e-101 374.0 256 69.9
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.5e-101 373.6 245 72.7
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.9e-101 373.2 219 79.5
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 4.3e-101 372.1 345 55.4
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 4.3e-101 372.1 218 78.9
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 4.3e-101 372.1 316 61.7
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 5.6e-101 371.7 247 70.0
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.3e-101 371.3 306 61.8
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 9.5e-101 370.9 312 59.6
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 9.5e-101 370.9 325 60.6
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.2e-100 370.5 334 59.9
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.2e-100 370.5 232 75.9
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-100 370.2 295 62.7
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.1e-100 369.8 222 78.4
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 2.8e-100 369.4 222 76.1
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 3.6e-100 369.0 293 65.2
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.6e-100 369.0 339 57.5
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 3.6e-100 369.0 221 79.6
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 4.7e-100 368.6 230 75.7
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 8.1e-100 367.9 323 57.9
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.1e-99 365.9 222 75.2
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 8.9e-99 364.4 220 78.2
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 3.4e-98 362.5 286 64.7
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 9.9e-98 360.9 234 71.8
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.3e-97 360.5 294 61.9
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 2.2e-97 359.8 234 74.4
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 2.9e-97 359.4 319 58.9
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 3.7e-97 359.0 218 76.6
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 4.9e-97 358.6 222 77.5
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.1e-96 357.5 271 65.3
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 2.4e-96 356.3 228 75.4
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 5.4e-96 355.1 315 59.7
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.2e-96 354.4 271 65.3
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.2e-95 354.0 214 76.2
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.2e-95 354.0 296 61.8
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.6e-95 353.6 323 58.2
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.1e-95 353.2 311 56.9
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.7e-95 352.8 237 73.4
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 3.5e-95 352.4 345 55.7
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 4.6e-95 352.1 216 76.4
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 2.3e-94 349.7 222 72.1
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 2.3e-94 349.7 222 76.1
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.6e-94 347.8 363 52.1
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.1e-93 347.4 236 68.6
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 4.3e-93 345.5 222 71.6
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 5.6e-93 345.1 244 70.1
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 7.3e-93 344.7 222 71.6
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.2e-92 344.0 310 59.4
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.2e-92 344.0 208 76.4
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.1e-92 343.2 221 72.9
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.1e-92 343.2 222 73.0
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 6.2e-92 341.7 216 73.6
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 8.1e-92 341.3 247 66.4
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.1e-91 340.9 230 69.6
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 6.8e-91 338.2 217 71.4
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.2e-90 337.4 223 72.2
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.2e-90 337.4 311 58.5
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 1.2e-90 337.4 204 76.5
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.6e-90 336.3 216 73.1
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 9.9e-90 334.3 330 55.2
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 9.9e-90 334.3 249 65.5
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 9.9e-90 334.3 249 65.5
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 9.9e-90 334.3 224 69.2
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.7e-89 333.6 218 71.1
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 3.8e-89 332.4 215 69.3
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 8.4e-89 331.3 250 63.6
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.1e-87 326.6 221 71.5
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.5e-87 325.9 309 58.3
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.3e-83 312.0 294 57.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.8e-81 305.8 182 79.1
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.1e-79 300.1 361 46.8
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 3.9e-78 295.8 331 53.2
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.3e-77 292.7 195 71.8
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.6e-77 292.0 202 68.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.1e-75 287.7 303 55.1
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 1.4e-75 287.3 193 69.9
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.7e-73 280.4 337 48.4
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.4e-73 278.1 241 59.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 2.3e-70 270.0 218 57.3
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.2e-64 249.2 313 48.2
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.3e-64 248.1 232 55.6
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.4e-61 238.4 215 57.2
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.6e-60 237.3 222 56.8
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.2e-58 231.1 134 75.4
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.7e-57 227.3 163 68.7
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 3.8e-57 226.1 162 61.7
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.5e-57 225.3 127 78.0
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 9.3e-56 221.5 190 60.5
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.6e-55 220.7 122 77.0
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 5.0e-49 199.1 221 49.8
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 7.4e-45 185.3 150 60.7
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 3.4e-42 176.4 126 56.3
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.8e-35 154.1 95 73.7
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 5.9e-34 149.1 145 44.8
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.2e-32 142.9 90 71.1
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.8e-28 129.4 133 53.4
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 6.5e-25 119.0 155 52.3
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.5e-18 96.7 146 44.5
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 4.4e-13 79.7 75 60.0
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 1.7e-09 67.8 77 46.8
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.5e-08 63.9 32 81.2
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 3.3e-08 63.5 179 31.8


User provided reference genes

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