Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 7.6e-62 240.4 124 100.0
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 7.6e-54 213.8 117 93.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 1.3e-50 203.0 117 87.2
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.0e-50 201.8 117 85.5
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 3.9e-50 201.4 117 87.2
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 5.1e-50 201.1 117 87.2
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.1e-49 199.9 117 85.5
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.5e-49 199.5 117 86.3
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 1.9e-49 199.1 117 85.5
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 2.5e-49 198.7 117 83.8
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 4.3e-49 198.0 117 84.6
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 5.7e-49 197.6 117 82.9
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 5.7e-49 197.6 117 82.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 5.7e-49 197.6 117 85.5
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 9.7e-49 196.8 117 84.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.3e-48 196.4 117 83.8
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.3e-48 196.4 117 83.8
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.6e-48 196.1 117 83.8
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.2e-48 195.7 117 82.1
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 2.2e-48 195.7 117 82.9
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.2e-48 195.7 117 82.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.8e-48 195.3 117 82.9
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 6.3e-48 194.1 117 83.8
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 8.2e-48 193.7 116 81.9
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 2.4e-47 192.2 117 81.2
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.4e-47 192.2 117 81.2
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 3.1e-47 191.8 117 82.1
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 4.1e-47 191.4 117 81.2
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.1e-47 191.4 117 81.2
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 4.1e-47 191.4 117 82.1
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.3e-47 191.0 117 82.1
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 6.9e-47 190.7 117 80.3
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 6.9e-47 190.7 117 78.6
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.2e-46 189.9 117 80.3
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.5e-46 189.5 117 81.2
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.0e-46 189.1 117 81.2
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 2.0e-46 189.1 117 80.3
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 2.0e-46 189.1 118 80.5
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.6e-46 188.7 117 79.5
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 3.4e-46 188.3 117 78.6
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 4.5e-46 188.0 117 77.8
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 4.5e-46 188.0 117 81.2
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 4.5e-46 188.0 117 81.2
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 4.5e-46 188.0 117 81.2
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 4.5e-46 188.0 117 77.8
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 7.7e-46 187.2 117 76.9
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 7.7e-46 187.2 117 80.3
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.3e-45 186.4 117 80.3
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 5.0e-45 184.5 117 79.5
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 5.0e-45 184.5 117 77.8
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.1e-44 183.3 117 76.9
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 1.1e-44 183.3 117 78.6
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-44 183.0 117 79.5
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-44 183.0 117 79.5
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-44 183.0 117 79.5
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.4e-44 183.0 117 77.8
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 1.4e-44 183.0 117 78.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.9e-44 182.6 117 74.4
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 2.5e-44 182.2 117 76.9
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.2e-44 181.8 117 77.8
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.2e-44 181.4 117 76.1
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.5e-44 181.0 116 76.7
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 5.5e-44 181.0 117 75.2
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 7.2e-44 180.6 119 76.5
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 9.4e-44 180.3 117 75.2
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 9.4e-44 180.3 117 75.2
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.2e-43 179.9 117 75.2
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.2e-43 179.9 117 77.8
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 2.7e-43 178.7 116 75.9
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.7e-43 178.7 116 75.0
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 3.6e-43 178.3 117 75.2
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 4.6e-43 177.9 117 75.2
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 6.1e-43 177.6 117 73.5
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 7.9e-43 177.2 117 76.1
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 7.9e-43 177.2 117 75.2
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 7.9e-43 177.2 117 76.1
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.4e-42 176.4 117 75.2
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 3.9e-42 174.9 111 78.4
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 6.7e-42 174.1 117 72.6
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 6.7e-42 174.1 117 75.2
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 6.7e-42 174.1 148 64.2
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 6.7e-42 174.1 117 75.2
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.1e-41 173.3 115 75.7
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.1e-41 173.3 115 75.7
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.5e-41 172.9 117 75.2
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.3e-41 171.8 139 66.9
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 4.3e-41 171.4 117 70.9
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 5.7e-41 171.0 117 70.9
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 5.7e-41 171.0 117 70.9
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.7e-41 171.0 117 71.8
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.7e-41 171.0 117 71.8
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 7.4e-41 170.6 117 74.4
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 9.7e-41 170.2 117 69.2
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.3e-40 169.9 117 70.9
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.3e-40 169.9 117 70.1
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.3e-40 169.9 114 73.7
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.7e-40 169.5 117 70.1
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.7e-40 169.5 117 70.1
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 2.2e-40 169.1 117 73.5
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.8e-40 168.7 98 83.7
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 4.8e-40 167.9 117 69.2
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 4.8e-40 167.9 122 68.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.1e-39 166.8 117 69.2
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 1.8e-39 166.0 117 71.8
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.4e-39 165.6 117 67.5
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 3.1e-39 165.2 117 69.2
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 5.3e-39 164.5 117 69.2
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 6.9e-39 164.1 117 68.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.0e-38 162.5 117 66.7
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 7.7e-38 160.6 117 65.8
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.7e-38 160.6 117 66.7
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 3.2e-36 155.2 117 68.4
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 3.2e-36 155.2 117 67.5
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 5.5e-36 154.5 116 64.7
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.6e-35 152.9 116 62.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.4e-34 149.8 117 65.0
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.1e-34 147.9 117 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 4.4e-33 144.8 116 64.7
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.7e-32 142.9 97 71.1
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.3e-32 141.0 117 59.8
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.1e-31 140.2 117 62.4
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.4e-31 139.0 120 57.5
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.4e-31 139.0 120 57.5
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 2.6e-30 135.6 117 60.7
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 8.5e-29 130.6 116 57.8
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 9.4e-28 127.1 116 58.6
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 2.7e-27 125.6 117 54.7
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.7e-27 124.8 119 54.6
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.4e-26 123.2 110 57.3
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 6.7e-26 120.9 126 51.6
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 5.9e-22 107.8 111 50.5
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 7.7e-22 107.5 79 64.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.5e-17 93.2 51 88.2
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.2e-16 89.4 51 82.4
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 2.8e-16 89.0 97 53.6
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.3e-16 87.8 54 83.3
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.1e-15 87.0 63 61.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.1e-15 85.1 77 61.0
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.0e-15 84.3 51 80.4
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.7e-14 82.4 129 38.8
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 1.7e-13 79.7 115 40.9
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 3.2e-12 75.5 69 55.1
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.6e-11 73.2 89 46.1
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 5.2e-10 68.2 50 60.0
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.7e-09 64.7 38 78.9
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.3e-08 63.5 36 86.1
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.3e-08 63.5 36 86.1
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 4.9e-08 61.6 50 58.0
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.4e-07 58.2 38 71.1
Gohir.A12G148851 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.6e-06 56.6 62 56.5


User provided reference genes

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